Gene : Glyma.20G245400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21433 - TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA Genomic Order:  2454
Name:  ? Glyma.20G245400 Secondary Identifier:  ? PAC:30520444
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G245400 0.5kb upstream 0.5kb upstream 5522 true Chr20: 47585622-47591143 Glycine max
Glyma.20G245400 0.5kb upstream 0.5kb upstream 500 false Chr20: 47585622-47586121 Glycine max
Glyma.20G245400 0.5kb downstream 0.5kb downstream 5522 true Chr20: 47586122-47591643 Glycine max
Glyma.20G245400 0.5kb downstream 0.5kb downstream 500 false Chr20: 47591144-47591643 Glycine max
Glyma.20G245400 1.0kb upstream 1.0kb upstream 6022 true Chr20: 47585122-47591143 Glycine max
Glyma.20G245400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 47585122-47586121 Glycine max
Glyma.20G245400 1.0kb downstream 1.0kb downstream 6022 true Chr20: 47586122-47592143 Glycine max
Glyma.20G245400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 47591144-47592143 Glycine max
Glyma.20G245400 2.0kb upstream 2.0kb upstream 7022 true Chr20: 47584122-47591143 Glycine max
Glyma.20G245400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 47584122-47586121 Glycine max
Glyma.20G245400 2.0kb downstream 2.0kb downstream 7022 true Chr20: 47586122-47593143 Glycine max
Glyma.20G245400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 47591144-47593143 Glycine max
Glyma.20G245400 5.0kb upstream 5.0kb upstream 10022 true Chr20: 47581122-47591143 Glycine max
Glyma.20G245400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 47581122-47586121 Glycine max
Glyma.20G245400 5.0kb downstream 5.0kb downstream 10022 true Chr20: 47586122-47596143 Glycine max
Glyma.20G245400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 47591144-47596143 Glycine max
Glyma.20G245400 10.0kb upstream 10.0kb upstream 15022 true Chr20: 47576122-47591143 Glycine max
Glyma.20G245400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 47576122-47586121 Glycine max
Glyma.20G245400 10.0kb downstream 10.0kb downstream 15022 true Chr20: 47586122-47601143 Glycine max
Glyma.20G245400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 47591144-47601143 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305607 5265 Fabidae View MSA
124065114 5270 Rosid View MSA
123747288 5271 Pentapetalae View MSA
122787986 5272 Eudicot View MSA
122046309 5273 Angiosperm View MSA
121351059 5274 Embryophyte View MSA
123427435 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.2399 0.0 148.407 High High
cufflinks 12.6929 0.0 51.3534   Low
cufflinks 16.0696 0.0 64.2352    
cufflinks 18.5303 0.0 74.4896    
cufflinks 22.5909 0.0 90.0856 High  
cufflinks 18.9236 0.0 79.3535    
cufflinks 30.1701 0.0 120.596 High High
cufflinks 16.5496 0.0 66.3948    
cufflinks 22.2859 0.0 87.394 High  
cufflinks 2.581        
cufflinks 2.361        
cufflinks 2.382        
cufflinks 3.625        
cufflinks 5.319       High
cufflinks 5.396     High High
cufflinks 3.596        
cufflinks 2.061       Low
cufflinks 2.658        
cufflinks 2.16       Low
cufflinks 4.424       High
cufflinks 2.592        
cufflinks 4.052        
cufflinks 3.341        
cufflinks 3.28        
cufflinks 4.333        
cufflinks 2.043       Low

0 Strain