Gene : Sevir.5G393000 S. viridis v2.1
Defline:  (1 of 1) 2.4.99.12 - Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase / Lipid IV(A) KDO transferase Genomic Order:  4244
Name:  ? Sevir.5G393000 Secondary Identifier:  ? PAC:40635342
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis KDOSYN-PWY Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.5G393000 0.5kb upstream 0.5kb upstream 14528 true Chr_05: 41359100-41373627 Setaria viridis
Sevir.5G393000 0.5kb upstream 0.5kb upstream 500 false Chr_05: 41373128-41373627 Setaria viridis
Sevir.5G393000 0.5kb downstream 0.5kb downstream 14528 true Chr_05: 41358600-41373127 Setaria viridis
Sevir.5G393000 0.5kb downstream 0.5kb downstream 500 false Chr_05: 41358600-41359099 Setaria viridis
Sevir.5G393000 1.0kb upstream 1.0kb upstream 15028 true Chr_05: 41359100-41374127 Setaria viridis
Sevir.5G393000 1.0kb upstream 1.0kb upstream 1000 false Chr_05: 41373128-41374127 Setaria viridis
Sevir.5G393000 1.0kb downstream 1.0kb downstream 15028 true Chr_05: 41358100-41373127 Setaria viridis
Sevir.5G393000 1.0kb downstream 1.0kb downstream 1000 false Chr_05: 41358100-41359099 Setaria viridis
Sevir.5G393000 2.0kb upstream 2.0kb upstream 16028 true Chr_05: 41359100-41375127 Setaria viridis
Sevir.5G393000 2.0kb upstream 2.0kb upstream 2000 false Chr_05: 41373128-41375127 Setaria viridis
Sevir.5G393000 2.0kb downstream 2.0kb downstream 16028 true Chr_05: 41357100-41373127 Setaria viridis
Sevir.5G393000 2.0kb downstream 2.0kb downstream 2000 false Chr_05: 41357100-41359099 Setaria viridis
Sevir.5G393000 5.0kb upstream 5.0kb upstream 19028 true Chr_05: 41359100-41378127 Setaria viridis
Sevir.5G393000 5.0kb upstream 5.0kb upstream 5000 false Chr_05: 41373128-41378127 Setaria viridis
Sevir.5G393000 5.0kb downstream 5.0kb downstream 19028 true Chr_05: 41354100-41373127 Setaria viridis
Sevir.5G393000 5.0kb downstream 5.0kb downstream 5000 false Chr_05: 41354100-41359099 Setaria viridis
Sevir.5G393000 10.0kb upstream 10.0kb upstream 24028 true Chr_05: 41359100-41383127 Setaria viridis
Sevir.5G393000 10.0kb upstream 10.0kb upstream 10000 false Chr_05: 41373128-41383127 Setaria viridis
Sevir.5G393000 10.0kb downstream 10.0kb downstream 24028 true Chr_05: 41349100-41373127 Setaria viridis
Sevir.5G393000 10.0kb downstream 10.0kb downstream 10000 false Chr_05: 41349100-41359099 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185332 5267 Panicoideae View MSA
124575901 5269 Grass View MSA
122042607 5273 Angiosperm View MSA
121344444 5274 Embryophyte View MSA
123380045 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain