Gene : Sevir.5G133700 S. viridis v2.1
Defline:  (1 of 1) PTHR11851//PTHR11851:SF138 - METALLOPROTEASE // SUBFAMILY NOT NAMED Genomic Order:  1465
Name:  ? Sevir.5G133700 Secondary Identifier:  ? PAC:40629266
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis PWY-3781 Setaria viridis pathologic  
Sviridis PWY-7279 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.5G133700 0.5kb upstream 0.5kb upstream 6193 true Chr_05: 11238803-11244995 Setaria viridis
Sevir.5G133700 0.5kb upstream 0.5kb upstream 500 false Chr_05: 11238803-11239302 Setaria viridis
Sevir.5G133700 0.5kb downstream 0.5kb downstream 6193 true Chr_05: 11239303-11245495 Setaria viridis
Sevir.5G133700 0.5kb downstream 0.5kb downstream 500 false Chr_05: 11244996-11245495 Setaria viridis
Sevir.5G133700 1.0kb upstream 1.0kb upstream 6693 true Chr_05: 11238303-11244995 Setaria viridis
Sevir.5G133700 1.0kb upstream 1.0kb upstream 1000 false Chr_05: 11238303-11239302 Setaria viridis
Sevir.5G133700 1.0kb downstream 1.0kb downstream 6693 true Chr_05: 11239303-11245995 Setaria viridis
Sevir.5G133700 1.0kb downstream 1.0kb downstream 1000 false Chr_05: 11244996-11245995 Setaria viridis
Sevir.5G133700 2.0kb upstream 2.0kb upstream 7693 true Chr_05: 11237303-11244995 Setaria viridis
Sevir.5G133700 2.0kb upstream 2.0kb upstream 2000 false Chr_05: 11237303-11239302 Setaria viridis
Sevir.5G133700 2.0kb downstream 2.0kb downstream 7693 true Chr_05: 11239303-11246995 Setaria viridis
Sevir.5G133700 2.0kb downstream 2.0kb downstream 2000 false Chr_05: 11244996-11246995 Setaria viridis
Sevir.5G133700 5.0kb upstream 5.0kb upstream 10693 true Chr_05: 11234303-11244995 Setaria viridis
Sevir.5G133700 5.0kb upstream 5.0kb upstream 5000 false Chr_05: 11234303-11239302 Setaria viridis
Sevir.5G133700 5.0kb downstream 5.0kb downstream 10693 true Chr_05: 11239303-11249995 Setaria viridis
Sevir.5G133700 5.0kb downstream 5.0kb downstream 5000 false Chr_05: 11244996-11249995 Setaria viridis
Sevir.5G133700 10.0kb upstream 10.0kb upstream 15693 true Chr_05: 11229303-11244995 Setaria viridis
Sevir.5G133700 10.0kb upstream 10.0kb upstream 10000 false Chr_05: 11229303-11239302 Setaria viridis
Sevir.5G133700 10.0kb downstream 10.0kb downstream 15693 true Chr_05: 11239303-11254995 Setaria viridis
Sevir.5G133700 10.0kb downstream 10.0kb downstream 10000 false Chr_05: 11244996-11254995 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041394 5273 Angiosperm View MSA
122189080 5267 Panicoideae View MSA
124574686 5269 Grass View MSA
121350423 5274 Embryophyte View MSA
123425006 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain