Gene : Sevir.5G080000 S. viridis v2.1
Defline:  (1 of 1) PTHR11946:SF7 - LEUCINE--TRNA LIGASE, MITOCHONDRIAL-RELATED Genomic Order:  870
Name:  ? Sevir.5G080000 Secondary Identifier:  ? PAC:40632651
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis TRNA-CHARGING-PWY Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.5G080000 0.5kb upstream 0.5kb upstream 15926 true Chr_05: 6397005-6412930 Setaria viridis
Sevir.5G080000 0.5kb upstream 0.5kb upstream 500 false Chr_05: 6412431-6412930 Setaria viridis
Sevir.5G080000 0.5kb downstream 0.5kb downstream 15926 true Chr_05: 6396505-6412430 Setaria viridis
Sevir.5G080000 0.5kb downstream 0.5kb downstream 500 false Chr_05: 6396505-6397004 Setaria viridis
Sevir.5G080000 1.0kb upstream 1.0kb upstream 16426 true Chr_05: 6397005-6413430 Setaria viridis
Sevir.5G080000 1.0kb upstream 1.0kb upstream 1000 false Chr_05: 6412431-6413430 Setaria viridis
Sevir.5G080000 1.0kb downstream 1.0kb downstream 16426 true Chr_05: 6396005-6412430 Setaria viridis
Sevir.5G080000 1.0kb downstream 1.0kb downstream 1000 false Chr_05: 6396005-6397004 Setaria viridis
Sevir.5G080000 2.0kb upstream 2.0kb upstream 17426 true Chr_05: 6397005-6414430 Setaria viridis
Sevir.5G080000 2.0kb upstream 2.0kb upstream 2000 false Chr_05: 6412431-6414430 Setaria viridis
Sevir.5G080000 2.0kb downstream 2.0kb downstream 17426 true Chr_05: 6395005-6412430 Setaria viridis
Sevir.5G080000 2.0kb downstream 2.0kb downstream 2000 false Chr_05: 6395005-6397004 Setaria viridis
Sevir.5G080000 5.0kb upstream 5.0kb upstream 20426 true Chr_05: 6397005-6417430 Setaria viridis
Sevir.5G080000 5.0kb upstream 5.0kb upstream 5000 false Chr_05: 6412431-6417430 Setaria viridis
Sevir.5G080000 5.0kb downstream 5.0kb downstream 20426 true Chr_05: 6392005-6412430 Setaria viridis
Sevir.5G080000 5.0kb downstream 5.0kb downstream 5000 false Chr_05: 6392005-6397004 Setaria viridis
Sevir.5G080000 10.0kb upstream 10.0kb upstream 25426 true Chr_05: 6397005-6422430 Setaria viridis
Sevir.5G080000 10.0kb upstream 10.0kb upstream 10000 false Chr_05: 6412431-6422430 Setaria viridis
Sevir.5G080000 10.0kb downstream 10.0kb downstream 25426 true Chr_05: 6387005-6412430 Setaria viridis
Sevir.5G080000 10.0kb downstream 10.0kb downstream 10000 false Chr_05: 6387005-6397004 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041369 5273 Angiosperm View MSA
122190357 5267 Panicoideae View MSA
124571312 5269 Grass View MSA
121347479 5274 Embryophyte View MSA
123424257 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain