Gene : Sevir.9G559000 S. viridis v2.1
Defline:  (1 of 1) PTHR10836:SF39 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC Genomic Order:  6101
Name:  ? Sevir.9G559000 Secondary Identifier:  ? PAC:40615481
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis ANAEROFRUCAT-PWY Setaria viridis pathologic  
Sviridis ANAGLYCOLYSIS-PWY Setaria viridis pathologic  
Sviridis CALVIN-PWY Setaria viridis pathologic  
Sviridis GLUCONEO-PWY Setaria viridis pathologic  
Sviridis PHOTOALL-PWY Setaria viridis pathologic  
Sviridis PWY-1042 Setaria viridis pathologic  
Sviridis PWY-5464 Setaria viridis pathologic  
Sviridis SUCSYN-PWY Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.9G559000 0.5kb upstream 0.5kb upstream 3636 true Chr_09: 54699642-54703277 Setaria viridis
Sevir.9G559000 0.5kb upstream 0.5kb upstream 500 false Chr_09: 54702778-54703277 Setaria viridis
Sevir.9G559000 0.5kb downstream 0.5kb downstream 3636 true Chr_09: 54699142-54702777 Setaria viridis
Sevir.9G559000 0.5kb downstream 0.5kb downstream 500 false Chr_09: 54699142-54699641 Setaria viridis
Sevir.9G559000 1.0kb upstream 1.0kb upstream 4136 true Chr_09: 54699642-54703777 Setaria viridis
Sevir.9G559000 1.0kb upstream 1.0kb upstream 1000 false Chr_09: 54702778-54703777 Setaria viridis
Sevir.9G559000 1.0kb downstream 1.0kb downstream 4136 true Chr_09: 54698642-54702777 Setaria viridis
Sevir.9G559000 1.0kb downstream 1.0kb downstream 1000 false Chr_09: 54698642-54699641 Setaria viridis
Sevir.9G559000 2.0kb upstream 2.0kb upstream 5136 true Chr_09: 54699642-54704777 Setaria viridis
Sevir.9G559000 2.0kb upstream 2.0kb upstream 2000 false Chr_09: 54702778-54704777 Setaria viridis
Sevir.9G559000 2.0kb downstream 2.0kb downstream 5136 true Chr_09: 54697642-54702777 Setaria viridis
Sevir.9G559000 2.0kb downstream 2.0kb downstream 2000 false Chr_09: 54697642-54699641 Setaria viridis
Sevir.9G559000 5.0kb upstream 5.0kb upstream 8136 true Chr_09: 54699642-54707777 Setaria viridis
Sevir.9G559000 5.0kb upstream 5.0kb upstream 5000 false Chr_09: 54702778-54707777 Setaria viridis
Sevir.9G559000 5.0kb downstream 5.0kb downstream 8136 true Chr_09: 54694642-54702777 Setaria viridis
Sevir.9G559000 5.0kb downstream 5.0kb downstream 5000 false Chr_09: 54694642-54699641 Setaria viridis
Sevir.9G559000 10.0kb upstream 10.0kb upstream 13136 true Chr_09: 54699642-54712777 Setaria viridis
Sevir.9G559000 10.0kb upstream 10.0kb upstream 10000 false Chr_09: 54702778-54712777 Setaria viridis
Sevir.9G559000 10.0kb downstream 10.0kb downstream 13136 true Chr_09: 54689642-54702777 Setaria viridis
Sevir.9G559000 10.0kb downstream 10.0kb downstream 10000 false Chr_09: 54689642-54699641 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183914 5267 Panicoideae View MSA
124578488 5269 Grass View MSA
122047323 5273 Angiosperm View MSA
121310728 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain