Gene : Sevir.1G054400 S. viridis v2.1
Defline:  (1 of 1) K06443 - lycopene beta-cyclase (lcyB, crtL1, crtY) Genomic Order:  604
Name:  ? Sevir.1G054400 Secondary Identifier:  ? PAC:40608138
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis CAROTENOID-PWY Setaria viridis pathologic  
Sviridis PWY-5943 Setaria viridis pathologic  
Sviridis PWY-5947 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.1G054400 0.5kb upstream 0.5kb upstream 4227 true Chr_01: 5128982-5133208 Setaria viridis
Sevir.1G054400 0.5kb upstream 0.5kb upstream 500 false Chr_01: 5128982-5129481 Setaria viridis
Sevir.1G054400 0.5kb downstream 0.5kb downstream 4227 true Chr_01: 5129482-5133708 Setaria viridis
Sevir.1G054400 0.5kb downstream 0.5kb downstream 500 false Chr_01: 5133209-5133708 Setaria viridis
Sevir.1G054400 1.0kb upstream 1.0kb upstream 4727 true Chr_01: 5128482-5133208 Setaria viridis
Sevir.1G054400 1.0kb upstream 1.0kb upstream 1000 false Chr_01: 5128482-5129481 Setaria viridis
Sevir.1G054400 1.0kb downstream 1.0kb downstream 4727 true Chr_01: 5129482-5134208 Setaria viridis
Sevir.1G054400 1.0kb downstream 1.0kb downstream 1000 false Chr_01: 5133209-5134208 Setaria viridis
Sevir.1G054400 2.0kb upstream 2.0kb upstream 5727 true Chr_01: 5127482-5133208 Setaria viridis
Sevir.1G054400 2.0kb upstream 2.0kb upstream 2000 false Chr_01: 5127482-5129481 Setaria viridis
Sevir.1G054400 2.0kb downstream 2.0kb downstream 5727 true Chr_01: 5129482-5135208 Setaria viridis
Sevir.1G054400 2.0kb downstream 2.0kb downstream 2000 false Chr_01: 5133209-5135208 Setaria viridis
Sevir.1G054400 5.0kb upstream 5.0kb upstream 8727 true Chr_01: 5124482-5133208 Setaria viridis
Sevir.1G054400 5.0kb upstream 5.0kb upstream 5000 false Chr_01: 5124482-5129481 Setaria viridis
Sevir.1G054400 5.0kb downstream 5.0kb downstream 8727 true Chr_01: 5129482-5138208 Setaria viridis
Sevir.1G054400 5.0kb downstream 5.0kb downstream 5000 false Chr_01: 5133209-5138208 Setaria viridis
Sevir.1G054400 10.0kb upstream 10.0kb upstream 13727 true Chr_01: 5119482-5133208 Setaria viridis
Sevir.1G054400 10.0kb upstream 10.0kb upstream 10000 false Chr_01: 5119482-5129481 Setaria viridis
Sevir.1G054400 10.0kb downstream 10.0kb downstream 13727 true Chr_01: 5129482-5143208 Setaria viridis
Sevir.1G054400 10.0kb downstream 10.0kb downstream 10000 false Chr_01: 5133209-5143208 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177716 5267 Panicoideae View MSA
124579476 5269 Grass View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain