Gene : Sevir.1G346000 S. viridis v2.1
Defline:  (1 of 1) PTHR11946:SF82 - ISOLEUCINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  3799
Name:  ? Sevir.1G346000 Secondary Identifier:  ? PAC:40605936
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis TRNA-CHARGING-PWY Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.1G346000 0.5kb upstream 0.5kb upstream 10056 true Chr_01: 39207532-39217587 Setaria viridis
Sevir.1G346000 0.5kb upstream 0.5kb upstream 500 false Chr_01: 39207532-39208031 Setaria viridis
Sevir.1G346000 0.5kb downstream 0.5kb downstream 10056 true Chr_01: 39208032-39218087 Setaria viridis
Sevir.1G346000 0.5kb downstream 0.5kb downstream 500 false Chr_01: 39217588-39218087 Setaria viridis
Sevir.1G346000 1.0kb upstream 1.0kb upstream 10556 true Chr_01: 39207032-39217587 Setaria viridis
Sevir.1G346000 1.0kb upstream 1.0kb upstream 1000 false Chr_01: 39207032-39208031 Setaria viridis
Sevir.1G346000 1.0kb downstream 1.0kb downstream 10556 true Chr_01: 39208032-39218587 Setaria viridis
Sevir.1G346000 1.0kb downstream 1.0kb downstream 1000 false Chr_01: 39217588-39218587 Setaria viridis
Sevir.1G346000 2.0kb upstream 2.0kb upstream 11556 true Chr_01: 39206032-39217587 Setaria viridis
Sevir.1G346000 2.0kb upstream 2.0kb upstream 2000 false Chr_01: 39206032-39208031 Setaria viridis
Sevir.1G346000 2.0kb downstream 2.0kb downstream 11556 true Chr_01: 39208032-39219587 Setaria viridis
Sevir.1G346000 2.0kb downstream 2.0kb downstream 2000 false Chr_01: 39217588-39219587 Setaria viridis
Sevir.1G346000 5.0kb upstream 5.0kb upstream 14556 true Chr_01: 39203032-39217587 Setaria viridis
Sevir.1G346000 5.0kb upstream 5.0kb upstream 5000 false Chr_01: 39203032-39208031 Setaria viridis
Sevir.1G346000 5.0kb downstream 5.0kb downstream 14556 true Chr_01: 39208032-39222587 Setaria viridis
Sevir.1G346000 5.0kb downstream 5.0kb downstream 5000 false Chr_01: 39217588-39222587 Setaria viridis
Sevir.1G346000 10.0kb upstream 10.0kb upstream 19556 true Chr_01: 39198032-39217587 Setaria viridis
Sevir.1G346000 10.0kb upstream 10.0kb upstream 10000 false Chr_01: 39198032-39208031 Setaria viridis
Sevir.1G346000 10.0kb downstream 10.0kb downstream 19556 true Chr_01: 39208032-39227587 Setaria viridis
Sevir.1G346000 10.0kb downstream 10.0kb downstream 10000 false Chr_01: 39217588-39227587 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185947 5267 Panicoideae View MSA
124573656 5269 Grass View MSA
122042566 5273 Angiosperm View MSA
121346634 5274 Embryophyte View MSA
123424788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain