Gene : Sevir.3G361900 S. viridis v2.1
Defline:  (1 of 1) PTHR21089//PTHR21089:SF1//PTHR21089:SF11 - SHIKIMATE DEHYDROGENASE // BIFUNCTIONAL 3-DEHYDROQUINATE DEHYDRATASE/SHIKIMATE DEHYDROGENASE, CHLOROPLASTIC // SUBFAMILY NOT NAMED Genomic Order:  3890
Name:  ? Sevir.3G361900 Secondary Identifier:  ? PAC:40647858
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis ARO-PWY Setaria viridis pathologic  
Sviridis PWY-6163 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.3G361900 0.5kb upstream 0.5kb upstream 5416 true Chr_03: 44095436-44100851 Setaria viridis
Sevir.3G361900 0.5kb upstream 0.5kb upstream 500 false Chr_03: 44095436-44095935 Setaria viridis
Sevir.3G361900 0.5kb downstream 0.5kb downstream 5416 true Chr_03: 44095936-44101351 Setaria viridis
Sevir.3G361900 0.5kb downstream 0.5kb downstream 500 false Chr_03: 44100852-44101351 Setaria viridis
Sevir.3G361900 1.0kb upstream 1.0kb upstream 5916 true Chr_03: 44094936-44100851 Setaria viridis
Sevir.3G361900 1.0kb upstream 1.0kb upstream 1000 false Chr_03: 44094936-44095935 Setaria viridis
Sevir.3G361900 1.0kb downstream 1.0kb downstream 5916 true Chr_03: 44095936-44101851 Setaria viridis
Sevir.3G361900 1.0kb downstream 1.0kb downstream 1000 false Chr_03: 44100852-44101851 Setaria viridis
Sevir.3G361900 2.0kb upstream 2.0kb upstream 6916 true Chr_03: 44093936-44100851 Setaria viridis
Sevir.3G361900 2.0kb upstream 2.0kb upstream 2000 false Chr_03: 44093936-44095935 Setaria viridis
Sevir.3G361900 2.0kb downstream 2.0kb downstream 6916 true Chr_03: 44095936-44102851 Setaria viridis
Sevir.3G361900 2.0kb downstream 2.0kb downstream 2000 false Chr_03: 44100852-44102851 Setaria viridis
Sevir.3G361900 5.0kb upstream 5.0kb upstream 9916 true Chr_03: 44090936-44100851 Setaria viridis
Sevir.3G361900 5.0kb upstream 5.0kb upstream 5000 false Chr_03: 44090936-44095935 Setaria viridis
Sevir.3G361900 5.0kb downstream 5.0kb downstream 9916 true Chr_03: 44095936-44105851 Setaria viridis
Sevir.3G361900 5.0kb downstream 5.0kb downstream 5000 false Chr_03: 44100852-44105851 Setaria viridis
Sevir.3G361900 10.0kb upstream 10.0kb upstream 14916 true Chr_03: 44085936-44100851 Setaria viridis
Sevir.3G361900 10.0kb upstream 10.0kb upstream 10000 false Chr_03: 44085936-44095935 Setaria viridis
Sevir.3G361900 10.0kb downstream 10.0kb downstream 14916 true Chr_03: 44095936-44110851 Setaria viridis
Sevir.3G361900 10.0kb downstream 10.0kb downstream 10000 false Chr_03: 44100852-44110851 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182665 5267 Panicoideae View MSA
124583290 5269 Grass View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain