Gene : Sevir.4G063400 S. viridis v2.1
Defline:  (1 of 1) PTHR12526:SF337 - STARCH SYNTHASE 2, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  719
Name:  ? Sevir.4G063400 Secondary Identifier:  ? PAC:40602497
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis GLYCOGENSYNTH-PWY Setaria viridis pathologic  
Sviridis PWY-622 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.4G063400 0.5kb upstream 0.5kb upstream 8030 true Chr_04: 5036838-5044867 Setaria viridis
Sevir.4G063400 0.5kb upstream 0.5kb upstream 500 false Chr_04: 5036838-5037337 Setaria viridis
Sevir.4G063400 0.5kb downstream 0.5kb downstream 8030 true Chr_04: 5037338-5045367 Setaria viridis
Sevir.4G063400 0.5kb downstream 0.5kb downstream 500 false Chr_04: 5044868-5045367 Setaria viridis
Sevir.4G063400 1.0kb upstream 1.0kb upstream 8530 true Chr_04: 5036338-5044867 Setaria viridis
Sevir.4G063400 1.0kb upstream 1.0kb upstream 1000 false Chr_04: 5036338-5037337 Setaria viridis
Sevir.4G063400 1.0kb downstream 1.0kb downstream 8530 true Chr_04: 5037338-5045867 Setaria viridis
Sevir.4G063400 1.0kb downstream 1.0kb downstream 1000 false Chr_04: 5044868-5045867 Setaria viridis
Sevir.4G063400 2.0kb upstream 2.0kb upstream 9530 true Chr_04: 5035338-5044867 Setaria viridis
Sevir.4G063400 2.0kb upstream 2.0kb upstream 2000 false Chr_04: 5035338-5037337 Setaria viridis
Sevir.4G063400 2.0kb downstream 2.0kb downstream 9530 true Chr_04: 5037338-5046867 Setaria viridis
Sevir.4G063400 2.0kb downstream 2.0kb downstream 2000 false Chr_04: 5044868-5046867 Setaria viridis
Sevir.4G063400 5.0kb upstream 5.0kb upstream 12530 true Chr_04: 5032338-5044867 Setaria viridis
Sevir.4G063400 5.0kb upstream 5.0kb upstream 5000 false Chr_04: 5032338-5037337 Setaria viridis
Sevir.4G063400 5.0kb downstream 5.0kb downstream 12530 true Chr_04: 5037338-5049867 Setaria viridis
Sevir.4G063400 5.0kb downstream 5.0kb downstream 5000 false Chr_04: 5044868-5049867 Setaria viridis
Sevir.4G063400 10.0kb upstream 10.0kb upstream 17530 true Chr_04: 5027338-5044867 Setaria viridis
Sevir.4G063400 10.0kb upstream 10.0kb upstream 10000 false Chr_04: 5027338-5037337 Setaria viridis
Sevir.4G063400 10.0kb downstream 10.0kb downstream 17530 true Chr_04: 5037338-5054867 Setaria viridis
Sevir.4G063400 10.0kb downstream 10.0kb downstream 10000 false Chr_04: 5044868-5054867 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186416 5267 Panicoideae View MSA
124573118 5269 Grass View MSA
122042634 5273 Angiosperm View MSA
121343835 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain