Protein Domain : IPR008397

Type:  Domain Name:  Alginate lyase domain
Description:  Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, , and the poly(alpha-L-guluronate) lyase, . This entry represents a domain found in the former. Short Name:  Alginate_lyase_dom
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0 Child Features

0 Contains

2 Cross Referencess

Identifier
PF05426
G3DSA:1.50.10.110

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0016829 IPR008397
GO:0042597 IPR008397

2 Ontology Annotations

GO Term Gene Name
GO:0016829 IPR008397
GO:0042597 IPR008397

1 Parent Features

DB identifier Type Name
IPR008929 Domain Chondroitin AC/alginate lyase

72 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
35969.m000014 B9TKI1 PAC:16826816 Ricinus communis 322  
27473.m000043 B9TBM1 PAC:16798466 Ricinus communis 302  
Lus10018968 PAC:23150002 Linum usitatissimum 239  
Lus10033824 PAC:23172878 Linum usitatissimum 122  
Lus10042552 PAC:23181759 Linum usitatissimum 407  
Lus10022011 PAC:23160227 Linum usitatissimum 407  
Araha.18528s0003.1.p PAC:28851123 Arabidopsis halleri 249  
Glyma.01G230300.1.p I1JAJ4 PAC:30541524 Glycine max 259  
Kaladp0071s0354.1.p PAC:35773849 Kalanchoe fedtschenkoi 254  
Kaladp0071s0354.2.p PAC:35773850 Kalanchoe fedtschenkoi 210  
Zm00008a019765_P01 PAC:37210973 Zea mays PH207 428  
Bol040777 PAC:37356082 Brassica oleracea capitata 98  
PGSC0003DMP400013655 PAC:37445944 Solanum tuberosum 114  
Sobic.001G160200.2.p C5WS39 PAC:37943522 Sorghum bicolor 339  
Sobic.001G160200.1.p A0A1B6QJ78 PAC:37943521 Sorghum bicolor 471  
Gohir.A03G095400.1.p PAC:38105545 Gossypium hirsutum 346  
Gohir.D02G113700.1.p PAC:38091272 Gossypium hirsutum 346  
Cz04g20060.t1 PAC:38235673 Chromochloris zofingiensis 435  
Lsat_1_v5_gn_3_13941.1 A0A2J6MEM5 PAC:38915060 Lactuca sativa 240  
Lsat_1_v5_gn_3_13941.3 PAC:38915059 Lactuca sativa 306  
SbRio.01G168800.1.p A0A1B6QJ78 PAC:38992297 Sorghum bicolor Rio 471  
SbRio.01G168800.2.p C5WS39 PAC:38992298 Sorghum bicolor Rio 339  
Thlar.0201s0019.1.p PAC:39526838 Thlaspi arvense 211  
Eusyr.0134s0744.1.p PAC:39709702 Euclidium syriacum 224  
MD12G1245500 PAC:40120572 Malus domestica 418  
MD04G1228400 PAC:40117899 Malus domestica 266  
Zm00001d033283_P001 A0A1D6KXF7 PAC:40211126 Zea mays 472  
Zm00001d014434_P001 A0A1D6GTC5 PAC:40289106 Zea mays 163  
Zm00001d013705_P001 C0PEZ2 PAC:40294619 Zea mays 469  
Zm00001d052694_P001 A0A1D6QIU5 PAC:40270248 Zea mays 78  

1 Publications

First Author Title Year Journal Volume Pages PubMed ID
            9683471