Gene : Brara.F01748 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11540:SF14 - MALATE DEHYDROGENASE, CHLOROPLASTIC Genomic Order:  1748
Name:  ? Brara.F01748 Secondary Identifier:  ? PAC:30631381
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLUCONEO-PWY Brassica rapa FPsc pathologic  
BrapaFPsc GLYOXYLATE-BYPASS Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-561 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5690 Brassica rapa FPsc pathologic  
BrapaFPsc PWY66-399 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7115 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F01748 0.5kb upstream 0.5kb upstream 2283 true A06: 10929673-10931955 Brassica rapa FPsc
Brara.F01748 0.5kb upstream 0.5kb upstream 500 false A06: 10931456-10931955 Brassica rapa FPsc
Brara.F01748 0.5kb downstream 0.5kb downstream 2283 true A06: 10929173-10931455 Brassica rapa FPsc
Brara.F01748 0.5kb downstream 0.5kb downstream 500 false A06: 10929173-10929672 Brassica rapa FPsc
Brara.F01748 1.0kb upstream 1.0kb upstream 2783 true A06: 10929673-10932455 Brassica rapa FPsc
Brara.F01748 1.0kb upstream 1.0kb upstream 1000 false A06: 10931456-10932455 Brassica rapa FPsc
Brara.F01748 1.0kb downstream 1.0kb downstream 2783 true A06: 10928673-10931455 Brassica rapa FPsc
Brara.F01748 1.0kb downstream 1.0kb downstream 1000 false A06: 10928673-10929672 Brassica rapa FPsc
Brara.F01748 2.0kb upstream 2.0kb upstream 3783 true A06: 10929673-10933455 Brassica rapa FPsc
Brara.F01748 2.0kb upstream 2.0kb upstream 2000 false A06: 10931456-10933455 Brassica rapa FPsc
Brara.F01748 2.0kb downstream 2.0kb downstream 3783 true A06: 10927673-10931455 Brassica rapa FPsc
Brara.F01748 2.0kb downstream 2.0kb downstream 2000 false A06: 10927673-10929672 Brassica rapa FPsc
Brara.F01748 5.0kb upstream 5.0kb upstream 6783 true A06: 10929673-10936455 Brassica rapa FPsc
Brara.F01748 5.0kb upstream 5.0kb upstream 5000 false A06: 10931456-10936455 Brassica rapa FPsc
Brara.F01748 5.0kb downstream 5.0kb downstream 6783 true A06: 10924673-10931455 Brassica rapa FPsc
Brara.F01748 5.0kb downstream 5.0kb downstream 5000 false A06: 10924673-10929672 Brassica rapa FPsc
Brara.F01748 10.0kb upstream 10.0kb upstream 11783 true A06: 10929673-10941455 Brassica rapa FPsc
Brara.F01748 10.0kb upstream 10.0kb upstream 10000 false A06: 10931456-10941455 Brassica rapa FPsc
Brara.F01748 10.0kb downstream 10.0kb downstream 11783 true A06: 10919673-10931455 Brassica rapa FPsc
Brara.F01748 10.0kb downstream 10.0kb downstream 10000 false A06: 10919673-10929672 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367755 5261 Brassicaceae View MSA
123838139 5264 Brassicales-Malvales View MSA
124343979 5266 SBM View MSA
124242231 5268 Malvidae View MSA
124067628 5270 Rosid View MSA
123748297 5271 Pentapetalae View MSA
122785823 5272 Eudicot View MSA
122049358 5273 Angiosperm View MSA
121344647 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier