Gene : Brara.D00419 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR22600:SF16 - BETA-HEXOSAMINIDASE 1 Genomic Order:  419
Name:  ? Brara.D00419 Secondary Identifier:  ? PAC:30622578
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6902 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.D00419 0.5kb upstream 0.5kb upstream 4409 true A04: 3018456-3022864 Brassica rapa FPsc
Brara.D00419 0.5kb upstream 0.5kb upstream 500 false A04: 3022365-3022864 Brassica rapa FPsc
Brara.D00419 0.5kb downstream 0.5kb downstream 4409 true A04: 3017956-3022364 Brassica rapa FPsc
Brara.D00419 0.5kb downstream 0.5kb downstream 500 false A04: 3017956-3018455 Brassica rapa FPsc
Brara.D00419 1.0kb upstream 1.0kb upstream 4909 true A04: 3018456-3023364 Brassica rapa FPsc
Brara.D00419 1.0kb upstream 1.0kb upstream 1000 false A04: 3022365-3023364 Brassica rapa FPsc
Brara.D00419 1.0kb downstream 1.0kb downstream 4909 true A04: 3017456-3022364 Brassica rapa FPsc
Brara.D00419 1.0kb downstream 1.0kb downstream 1000 false A04: 3017456-3018455 Brassica rapa FPsc
Brara.D00419 2.0kb upstream 2.0kb upstream 5909 true A04: 3018456-3024364 Brassica rapa FPsc
Brara.D00419 2.0kb upstream 2.0kb upstream 2000 false A04: 3022365-3024364 Brassica rapa FPsc
Brara.D00419 2.0kb downstream 2.0kb downstream 5909 true A04: 3016456-3022364 Brassica rapa FPsc
Brara.D00419 2.0kb downstream 2.0kb downstream 2000 false A04: 3016456-3018455 Brassica rapa FPsc
Brara.D00419 5.0kb upstream 5.0kb upstream 8909 true A04: 3018456-3027364 Brassica rapa FPsc
Brara.D00419 5.0kb upstream 5.0kb upstream 5000 false A04: 3022365-3027364 Brassica rapa FPsc
Brara.D00419 5.0kb downstream 5.0kb downstream 8909 true A04: 3013456-3022364 Brassica rapa FPsc
Brara.D00419 5.0kb downstream 5.0kb downstream 5000 false A04: 3013456-3018455 Brassica rapa FPsc
Brara.D00419 10.0kb upstream 10.0kb upstream 13909 true A04: 3018456-3032364 Brassica rapa FPsc
Brara.D00419 10.0kb upstream 10.0kb upstream 10000 false A04: 3022365-3032364 Brassica rapa FPsc
Brara.D00419 10.0kb downstream 10.0kb downstream 13909 true A04: 3008456-3022364 Brassica rapa FPsc
Brara.D00419 10.0kb downstream 10.0kb downstream 10000 false A04: 3008456-3018455 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361854 5261 Brassicaceae View MSA
123827865 5264 Brassicales-Malvales View MSA
124345307 5266 SBM View MSA
124237897 5268 Malvidae View MSA
124068580 5270 Rosid View MSA
123738133 5271 Pentapetalae View MSA
122790534 5272 Eudicot View MSA
122047167 5273 Angiosperm View MSA
121346826 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier