Gene : Brara.F01305 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR10277//PTHR10277:SF42 - HOMOCITRATE SYNTHASE-RELATED Genomic Order:  1305
Name:  ? Brara.F01305 Secondary Identifier:  ? PAC:30627918
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc BRANCHED-CHAIN-AA-SYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc LEUSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F01305 0.5kb upstream 0.5kb upstream 3907 true A06: 7267117-7271023 Brassica rapa FPsc
Brara.F01305 0.5kb upstream 0.5kb upstream 500 false A06: 7267117-7267616 Brassica rapa FPsc
Brara.F01305 0.5kb downstream 0.5kb downstream 3907 true A06: 7267617-7271523 Brassica rapa FPsc
Brara.F01305 0.5kb downstream 0.5kb downstream 500 false A06: 7271024-7271523 Brassica rapa FPsc
Brara.F01305 1.0kb upstream 1.0kb upstream 4407 true A06: 7266617-7271023 Brassica rapa FPsc
Brara.F01305 1.0kb upstream 1.0kb upstream 1000 false A06: 7266617-7267616 Brassica rapa FPsc
Brara.F01305 1.0kb downstream 1.0kb downstream 4407 true A06: 7267617-7272023 Brassica rapa FPsc
Brara.F01305 1.0kb downstream 1.0kb downstream 1000 false A06: 7271024-7272023 Brassica rapa FPsc
Brara.F01305 2.0kb upstream 2.0kb upstream 5407 true A06: 7265617-7271023 Brassica rapa FPsc
Brara.F01305 2.0kb upstream 2.0kb upstream 2000 false A06: 7265617-7267616 Brassica rapa FPsc
Brara.F01305 2.0kb downstream 2.0kb downstream 5407 true A06: 7267617-7273023 Brassica rapa FPsc
Brara.F01305 2.0kb downstream 2.0kb downstream 2000 false A06: 7271024-7273023 Brassica rapa FPsc
Brara.F01305 5.0kb upstream 5.0kb upstream 8407 true A06: 7262617-7271023 Brassica rapa FPsc
Brara.F01305 5.0kb upstream 5.0kb upstream 5000 false A06: 7262617-7267616 Brassica rapa FPsc
Brara.F01305 5.0kb downstream 5.0kb downstream 8407 true A06: 7267617-7276023 Brassica rapa FPsc
Brara.F01305 5.0kb downstream 5.0kb downstream 5000 false A06: 7271024-7276023 Brassica rapa FPsc
Brara.F01305 10.0kb upstream 10.0kb upstream 13407 true A06: 7257617-7271023 Brassica rapa FPsc
Brara.F01305 10.0kb upstream 10.0kb upstream 10000 false A06: 7257617-7267616 Brassica rapa FPsc
Brara.F01305 10.0kb downstream 10.0kb downstream 13407 true A06: 7267617-7281023 Brassica rapa FPsc
Brara.F01305 10.0kb downstream 10.0kb downstream 10000 false A06: 7271024-7281023 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362049 5261 Brassicaceae View MSA
123837144 5264 Brassicales-Malvales View MSA
124322248 5266 SBM View MSA
124251393 5268 Malvidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier