Gene : Brara.D00718 B. rapa FPsc v1.3
Defline:  (1 of 5) 4.2.1.33 - 3-isopropylmalate dehydratase / Isopropylmalate isomerase Genomic Order:  718
Name:  ? Brara.D00718 Secondary Identifier:  ? PAC:30622861
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc BRANCHED-CHAIN-AA-SYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc LEUSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.D00718 0.5kb upstream 0.5kb upstream 4071 true A04: 5968389-5972459 Brassica rapa FPsc
Brara.D00718 0.5kb upstream 0.5kb upstream 500 false A04: 5968389-5968888 Brassica rapa FPsc
Brara.D00718 0.5kb downstream 0.5kb downstream 4071 true A04: 5968889-5972959 Brassica rapa FPsc
Brara.D00718 0.5kb downstream 0.5kb downstream 500 false A04: 5972460-5972959 Brassica rapa FPsc
Brara.D00718 1.0kb upstream 1.0kb upstream 4571 true A04: 5967889-5972459 Brassica rapa FPsc
Brara.D00718 1.0kb upstream 1.0kb upstream 1000 false A04: 5967889-5968888 Brassica rapa FPsc
Brara.D00718 1.0kb downstream 1.0kb downstream 4571 true A04: 5968889-5973459 Brassica rapa FPsc
Brara.D00718 1.0kb downstream 1.0kb downstream 1000 false A04: 5972460-5973459 Brassica rapa FPsc
Brara.D00718 2.0kb upstream 2.0kb upstream 5571 true A04: 5966889-5972459 Brassica rapa FPsc
Brara.D00718 2.0kb upstream 2.0kb upstream 2000 false A04: 5966889-5968888 Brassica rapa FPsc
Brara.D00718 2.0kb downstream 2.0kb downstream 5571 true A04: 5968889-5974459 Brassica rapa FPsc
Brara.D00718 2.0kb downstream 2.0kb downstream 2000 false A04: 5972460-5974459 Brassica rapa FPsc
Brara.D00718 5.0kb upstream 5.0kb upstream 8571 true A04: 5963889-5972459 Brassica rapa FPsc
Brara.D00718 5.0kb upstream 5.0kb upstream 5000 false A04: 5963889-5968888 Brassica rapa FPsc
Brara.D00718 5.0kb downstream 5.0kb downstream 8571 true A04: 5968889-5977459 Brassica rapa FPsc
Brara.D00718 5.0kb downstream 5.0kb downstream 5000 false A04: 5972460-5977459 Brassica rapa FPsc
Brara.D00718 10.0kb upstream 10.0kb upstream 13571 true A04: 5958889-5972459 Brassica rapa FPsc
Brara.D00718 10.0kb upstream 10.0kb upstream 10000 false A04: 5958889-5968888 Brassica rapa FPsc
Brara.D00718 10.0kb downstream 10.0kb downstream 13571 true A04: 5968889-5982459 Brassica rapa FPsc
Brara.D00718 10.0kb downstream 10.0kb downstream 10000 false A04: 5972460-5982459 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376626 5261 Brassicaceae View MSA
123838353 5264 Brassicales-Malvales View MSA
124346473 5266 SBM View MSA
124238803 5268 Malvidae View MSA
124064281 5270 Rosid View MSA
123737905 5271 Pentapetalae View MSA
122792861 5272 Eudicot View MSA
122047334 5273 Angiosperm View MSA
121347218 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier