Gene : Brara.D00922 B. rapa FPsc v1.3
Defline:  (1 of 5) 6.1.1.16 - Cysteine--tRNA ligase / Cysteinyl-tRNA synthetase Genomic Order:  922
Name:  ? Brara.D00922 Secondary Identifier:  ? PAC:30621803
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.D00922 0.5kb upstream 0.5kb upstream 3017 true A04: 8684359-8687375 Brassica rapa FPsc
Brara.D00922 0.5kb upstream 0.5kb upstream 500 false A04: 8686876-8687375 Brassica rapa FPsc
Brara.D00922 0.5kb downstream 0.5kb downstream 3017 true A04: 8683859-8686875 Brassica rapa FPsc
Brara.D00922 0.5kb downstream 0.5kb downstream 500 false A04: 8683859-8684358 Brassica rapa FPsc
Brara.D00922 1.0kb upstream 1.0kb upstream 3517 true A04: 8684359-8687875 Brassica rapa FPsc
Brara.D00922 1.0kb upstream 1.0kb upstream 1000 false A04: 8686876-8687875 Brassica rapa FPsc
Brara.D00922 1.0kb downstream 1.0kb downstream 3517 true A04: 8683359-8686875 Brassica rapa FPsc
Brara.D00922 1.0kb downstream 1.0kb downstream 1000 false A04: 8683359-8684358 Brassica rapa FPsc
Brara.D00922 2.0kb upstream 2.0kb upstream 4517 true A04: 8684359-8688875 Brassica rapa FPsc
Brara.D00922 2.0kb upstream 2.0kb upstream 2000 false A04: 8686876-8688875 Brassica rapa FPsc
Brara.D00922 2.0kb downstream 2.0kb downstream 4517 true A04: 8682359-8686875 Brassica rapa FPsc
Brara.D00922 2.0kb downstream 2.0kb downstream 2000 false A04: 8682359-8684358 Brassica rapa FPsc
Brara.D00922 5.0kb upstream 5.0kb upstream 7517 true A04: 8684359-8691875 Brassica rapa FPsc
Brara.D00922 5.0kb upstream 5.0kb upstream 5000 false A04: 8686876-8691875 Brassica rapa FPsc
Brara.D00922 5.0kb downstream 5.0kb downstream 7517 true A04: 8679359-8686875 Brassica rapa FPsc
Brara.D00922 5.0kb downstream 5.0kb downstream 5000 false A04: 8679359-8684358 Brassica rapa FPsc
Brara.D00922 10.0kb upstream 10.0kb upstream 12517 true A04: 8684359-8696875 Brassica rapa FPsc
Brara.D00922 10.0kb upstream 10.0kb upstream 10000 false A04: 8686876-8696875 Brassica rapa FPsc
Brara.D00922 10.0kb downstream 10.0kb downstream 12517 true A04: 8674359-8686875 Brassica rapa FPsc
Brara.D00922 10.0kb downstream 10.0kb downstream 10000 false A04: 8674359-8684358 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381714 5261 Brassicaceae View MSA
123803392 5264 Brassicales-Malvales View MSA
124300505 5266 SBM View MSA
124250049 5268 Malvidae View MSA
124063129 5270 Rosid View MSA
123736819 5271 Pentapetalae View MSA
122791424 5272 Eudicot View MSA
122050932 5273 Angiosperm View MSA
121350340 5274 Embryophyte View MSA
123427761 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier