Gene : Brara.F03020 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR22572:SF101 - GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE SMALL SUBUNIT, CHLOROPLASTIC Genomic Order:  3020
Name:  ? Brara.F03020 Secondary Identifier:  ? PAC:30629755
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLYCOGENSYNTH-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-622 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F03020 0.5kb upstream 0.5kb upstream 3264 true A06: 24200333-24203596 Brassica rapa FPsc
Brara.F03020 0.5kb upstream 0.5kb upstream 500 false A06: 24203097-24203596 Brassica rapa FPsc
Brara.F03020 0.5kb downstream 0.5kb downstream 3264 true A06: 24199833-24203096 Brassica rapa FPsc
Brara.F03020 0.5kb downstream 0.5kb downstream 500 false A06: 24199833-24200332 Brassica rapa FPsc
Brara.F03020 1.0kb upstream 1.0kb upstream 3764 true A06: 24200333-24204096 Brassica rapa FPsc
Brara.F03020 1.0kb upstream 1.0kb upstream 1000 false A06: 24203097-24204096 Brassica rapa FPsc
Brara.F03020 1.0kb downstream 1.0kb downstream 3764 true A06: 24199333-24203096 Brassica rapa FPsc
Brara.F03020 1.0kb downstream 1.0kb downstream 1000 false A06: 24199333-24200332 Brassica rapa FPsc
Brara.F03020 2.0kb upstream 2.0kb upstream 4764 true A06: 24200333-24205096 Brassica rapa FPsc
Brara.F03020 2.0kb upstream 2.0kb upstream 2000 false A06: 24203097-24205096 Brassica rapa FPsc
Brara.F03020 2.0kb downstream 2.0kb downstream 4764 true A06: 24198333-24203096 Brassica rapa FPsc
Brara.F03020 2.0kb downstream 2.0kb downstream 2000 false A06: 24198333-24200332 Brassica rapa FPsc
Brara.F03020 5.0kb upstream 5.0kb upstream 7764 true A06: 24200333-24208096 Brassica rapa FPsc
Brara.F03020 5.0kb upstream 5.0kb upstream 5000 false A06: 24203097-24208096 Brassica rapa FPsc
Brara.F03020 5.0kb downstream 5.0kb downstream 7764 true A06: 24195333-24203096 Brassica rapa FPsc
Brara.F03020 5.0kb downstream 5.0kb downstream 5000 false A06: 24195333-24200332 Brassica rapa FPsc
Brara.F03020 10.0kb upstream 10.0kb upstream 12764 true A06: 24200333-24213096 Brassica rapa FPsc
Brara.F03020 10.0kb upstream 10.0kb upstream 10000 false A06: 24203097-24213096 Brassica rapa FPsc
Brara.F03020 10.0kb downstream 10.0kb downstream 12764 true A06: 24190333-24203096 Brassica rapa FPsc
Brara.F03020 10.0kb downstream 10.0kb downstream 10000 false A06: 24190333-24200332 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362214 5261 Brassicaceae View MSA
123836919 5264 Brassicales-Malvales View MSA
124346329 5266 SBM View MSA
124239749 5268 Malvidae View MSA
124067564 5270 Rosid View MSA
123737587 5271 Pentapetalae View MSA
122787627 5272 Eudicot View MSA
122044250 5273 Angiosperm View MSA
121350002 5274 Embryophyte View MSA
123424956 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier