Gene : Brara.G01281 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR22603:SF24 - PROTEIN CKA-1, ISOFORM A Genomic Order:  1281
Name:  ? Brara.G01281 Secondary Identifier:  ? PAC:30635161
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-3385 Brassica rapa FPsc pathologic  
BrapaFPsc PWY4FS-6 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G01281 0.5kb upstream 0.5kb upstream 3038 true A07: 13475231-13478268 Brassica rapa FPsc
Brara.G01281 0.5kb upstream 0.5kb upstream 500 false A07: 13475231-13475730 Brassica rapa FPsc
Brara.G01281 0.5kb downstream 0.5kb downstream 3038 true A07: 13475731-13478768 Brassica rapa FPsc
Brara.G01281 0.5kb downstream 0.5kb downstream 500 false A07: 13478269-13478768 Brassica rapa FPsc
Brara.G01281 1.0kb upstream 1.0kb upstream 3538 true A07: 13474731-13478268 Brassica rapa FPsc
Brara.G01281 1.0kb upstream 1.0kb upstream 1000 false A07: 13474731-13475730 Brassica rapa FPsc
Brara.G01281 1.0kb downstream 1.0kb downstream 3538 true A07: 13475731-13479268 Brassica rapa FPsc
Brara.G01281 1.0kb downstream 1.0kb downstream 1000 false A07: 13478269-13479268 Brassica rapa FPsc
Brara.G01281 2.0kb upstream 2.0kb upstream 4538 true A07: 13473731-13478268 Brassica rapa FPsc
Brara.G01281 2.0kb upstream 2.0kb upstream 2000 false A07: 13473731-13475730 Brassica rapa FPsc
Brara.G01281 2.0kb downstream 2.0kb downstream 4538 true A07: 13475731-13480268 Brassica rapa FPsc
Brara.G01281 2.0kb downstream 2.0kb downstream 2000 false A07: 13478269-13480268 Brassica rapa FPsc
Brara.G01281 5.0kb upstream 5.0kb upstream 7538 true A07: 13470731-13478268 Brassica rapa FPsc
Brara.G01281 5.0kb upstream 5.0kb upstream 5000 false A07: 13470731-13475730 Brassica rapa FPsc
Brara.G01281 5.0kb downstream 5.0kb downstream 7538 true A07: 13475731-13483268 Brassica rapa FPsc
Brara.G01281 5.0kb downstream 5.0kb downstream 5000 false A07: 13478269-13483268 Brassica rapa FPsc
Brara.G01281 10.0kb upstream 10.0kb upstream 12538 true A07: 13465731-13478268 Brassica rapa FPsc
Brara.G01281 10.0kb upstream 10.0kb upstream 10000 false A07: 13465731-13475730 Brassica rapa FPsc
Brara.G01281 10.0kb downstream 10.0kb downstream 12538 true A07: 13475731-13488268 Brassica rapa FPsc
Brara.G01281 10.0kb downstream 10.0kb downstream 10000 false A07: 13478269-13488268 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362020 5261 Brassicaceae View MSA
123831797 5264 Brassicales-Malvales View MSA
124338804 5266 SBM View MSA
124248672 5268 Malvidae View MSA
124069180 5270 Rosid View MSA
123746925 5271 Pentapetalae View MSA
122797485 5272 Eudicot View MSA
122047896 5273 Angiosperm View MSA
121347088 5274 Embryophyte View MSA
123426626 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier