Gene : Brara.A02878 B. rapa FPsc v1.3
Defline:  (1 of 7) PTHR22849:SF52 - E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  2878
Name:  ? Brara.A02878 Secondary Identifier:  ? PAC:30637330
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A02878 0.5kb upstream 0.5kb upstream 1754 true A01: 24439322-24441075 Brassica rapa FPsc
Brara.A02878 0.5kb upstream 0.5kb upstream 500 false A01: 24440576-24441075 Brassica rapa FPsc
Brara.A02878 0.5kb downstream 0.5kb downstream 1754 true A01: 24438822-24440575 Brassica rapa FPsc
Brara.A02878 0.5kb downstream 0.5kb downstream 500 false A01: 24438822-24439321 Brassica rapa FPsc
Brara.A02878 1.0kb upstream 1.0kb upstream 2254 true A01: 24439322-24441575 Brassica rapa FPsc
Brara.A02878 1.0kb upstream 1.0kb upstream 1000 false A01: 24440576-24441575 Brassica rapa FPsc
Brara.A02878 1.0kb downstream 1.0kb downstream 2254 true A01: 24438322-24440575 Brassica rapa FPsc
Brara.A02878 1.0kb downstream 1.0kb downstream 1000 false A01: 24438322-24439321 Brassica rapa FPsc
Brara.A02878 2.0kb upstream 2.0kb upstream 3254 true A01: 24439322-24442575 Brassica rapa FPsc
Brara.A02878 2.0kb upstream 2.0kb upstream 2000 false A01: 24440576-24442575 Brassica rapa FPsc
Brara.A02878 2.0kb downstream 2.0kb downstream 3254 true A01: 24437322-24440575 Brassica rapa FPsc
Brara.A02878 2.0kb downstream 2.0kb downstream 2000 false A01: 24437322-24439321 Brassica rapa FPsc
Brara.A02878 5.0kb upstream 5.0kb upstream 6254 true A01: 24439322-24445575 Brassica rapa FPsc
Brara.A02878 5.0kb upstream 5.0kb upstream 5000 false A01: 24440576-24445575 Brassica rapa FPsc
Brara.A02878 5.0kb downstream 5.0kb downstream 6254 true A01: 24434322-24440575 Brassica rapa FPsc
Brara.A02878 5.0kb downstream 5.0kb downstream 5000 false A01: 24434322-24439321 Brassica rapa FPsc
Brara.A02878 10.0kb upstream 10.0kb upstream 11254 true A01: 24439322-24450575 Brassica rapa FPsc
Brara.A02878 10.0kb upstream 10.0kb upstream 10000 false A01: 24440576-24450575 Brassica rapa FPsc
Brara.A02878 10.0kb downstream 10.0kb downstream 11254 true A01: 24429322-24440575 Brassica rapa FPsc
Brara.A02878 10.0kb downstream 10.0kb downstream 10000 false A01: 24429322-24439321 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379153 5261 Brassicaceae View MSA
123802114 5264 Brassicales-Malvales View MSA
124299332 5266 SBM View MSA
124246737 5268 Malvidae View MSA
124065727 5270 Rosid View MSA
123740066 5271 Pentapetalae View MSA
122793707 5272 Eudicot View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier