Gene : Brara.G01944 B. rapa FPsc v1.3
Defline:  (1 of 11) PTHR10315:SF34 - E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED Genomic Order:  1944
Name:  ? Brara.G01944 Secondary Identifier:  ? PAC:30635461
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G01944 0.5kb upstream 0.5kb upstream 2632 true A07: 17773720-17776351 Brassica rapa FPsc
Brara.G01944 0.5kb upstream 0.5kb upstream 500 false A07: 17775852-17776351 Brassica rapa FPsc
Brara.G01944 0.5kb downstream 0.5kb downstream 2632 true A07: 17773220-17775851 Brassica rapa FPsc
Brara.G01944 0.5kb downstream 0.5kb downstream 500 false A07: 17773220-17773719 Brassica rapa FPsc
Brara.G01944 1.0kb upstream 1.0kb upstream 3132 true A07: 17773720-17776851 Brassica rapa FPsc
Brara.G01944 1.0kb upstream 1.0kb upstream 1000 false A07: 17775852-17776851 Brassica rapa FPsc
Brara.G01944 1.0kb downstream 1.0kb downstream 3132 true A07: 17772720-17775851 Brassica rapa FPsc
Brara.G01944 1.0kb downstream 1.0kb downstream 1000 false A07: 17772720-17773719 Brassica rapa FPsc
Brara.G01944 2.0kb upstream 2.0kb upstream 4132 true A07: 17773720-17777851 Brassica rapa FPsc
Brara.G01944 2.0kb upstream 2.0kb upstream 2000 false A07: 17775852-17777851 Brassica rapa FPsc
Brara.G01944 2.0kb downstream 2.0kb downstream 4132 true A07: 17771720-17775851 Brassica rapa FPsc
Brara.G01944 2.0kb downstream 2.0kb downstream 2000 false A07: 17771720-17773719 Brassica rapa FPsc
Brara.G01944 5.0kb upstream 5.0kb upstream 7132 true A07: 17773720-17780851 Brassica rapa FPsc
Brara.G01944 5.0kb upstream 5.0kb upstream 5000 false A07: 17775852-17780851 Brassica rapa FPsc
Brara.G01944 5.0kb downstream 5.0kb downstream 7132 true A07: 17768720-17775851 Brassica rapa FPsc
Brara.G01944 5.0kb downstream 5.0kb downstream 5000 false A07: 17768720-17773719 Brassica rapa FPsc
Brara.G01944 10.0kb upstream 10.0kb upstream 12132 true A07: 17773720-17785851 Brassica rapa FPsc
Brara.G01944 10.0kb upstream 10.0kb upstream 10000 false A07: 17775852-17785851 Brassica rapa FPsc
Brara.G01944 10.0kb downstream 10.0kb downstream 12132 true A07: 17763720-17775851 Brassica rapa FPsc
Brara.G01944 10.0kb downstream 10.0kb downstream 10000 false A07: 17763720-17773719 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369322 5261 Brassicaceae View MSA
123836007 5264 Brassicales-Malvales View MSA
124338508 5266 SBM View MSA
124251160 5268 Malvidae View MSA
124072834 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier