Gene : Brara.G01958 B. rapa FPsc v1.3
Defline:  (1 of 8) 6.1.1.15 - Proline--tRNA ligase / Prolyl-tRNA synthetase Genomic Order:  1958
Name:  ? Brara.G01958 Secondary Identifier:  ? PAC:30633325
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G01958 0.5kb upstream 0.5kb upstream 3645 true A07: 17846036-17849680 Brassica rapa FPsc
Brara.G01958 0.5kb upstream 0.5kb upstream 500 false A07: 17849181-17849680 Brassica rapa FPsc
Brara.G01958 0.5kb downstream 0.5kb downstream 3645 true A07: 17845536-17849180 Brassica rapa FPsc
Brara.G01958 0.5kb downstream 0.5kb downstream 500 false A07: 17845536-17846035 Brassica rapa FPsc
Brara.G01958 1.0kb upstream 1.0kb upstream 4145 true A07: 17846036-17850180 Brassica rapa FPsc
Brara.G01958 1.0kb upstream 1.0kb upstream 1000 false A07: 17849181-17850180 Brassica rapa FPsc
Brara.G01958 1.0kb downstream 1.0kb downstream 4145 true A07: 17845036-17849180 Brassica rapa FPsc
Brara.G01958 1.0kb downstream 1.0kb downstream 1000 false A07: 17845036-17846035 Brassica rapa FPsc
Brara.G01958 2.0kb upstream 2.0kb upstream 5145 true A07: 17846036-17851180 Brassica rapa FPsc
Brara.G01958 2.0kb upstream 2.0kb upstream 2000 false A07: 17849181-17851180 Brassica rapa FPsc
Brara.G01958 2.0kb downstream 2.0kb downstream 5145 true A07: 17844036-17849180 Brassica rapa FPsc
Brara.G01958 2.0kb downstream 2.0kb downstream 2000 false A07: 17844036-17846035 Brassica rapa FPsc
Brara.G01958 5.0kb upstream 5.0kb upstream 8145 true A07: 17846036-17854180 Brassica rapa FPsc
Brara.G01958 5.0kb upstream 5.0kb upstream 5000 false A07: 17849181-17854180 Brassica rapa FPsc
Brara.G01958 5.0kb downstream 5.0kb downstream 8145 true A07: 17841036-17849180 Brassica rapa FPsc
Brara.G01958 5.0kb downstream 5.0kb downstream 5000 false A07: 17841036-17846035 Brassica rapa FPsc
Brara.G01958 10.0kb upstream 10.0kb upstream 13145 true A07: 17846036-17859180 Brassica rapa FPsc
Brara.G01958 10.0kb upstream 10.0kb upstream 10000 false A07: 17849181-17859180 Brassica rapa FPsc
Brara.G01958 10.0kb downstream 10.0kb downstream 13145 true A07: 17836036-17849180 Brassica rapa FPsc
Brara.G01958 10.0kb downstream 10.0kb downstream 10000 false A07: 17836036-17846035 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365316 5261 Brassicaceae View MSA
123831041 5264 Brassicales-Malvales View MSA
124348511 5266 SBM View MSA
124247467 5268 Malvidae View MSA
124064223 5270 Rosid View MSA
123739091 5271 Pentapetalae View MSA
122787738 5272 Eudicot View MSA
122046547 5273 Angiosperm View MSA
121346675 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier