Gene : Brara.G01800 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR14969:SF3 - DIHYDROSPHINGOSINE 1-PHOSPHATE PHOSPHATASE LCB3-RELATED Genomic Order:  1800
Name:  ? Brara.G01800 Secondary Identifier:  ? PAC:30634877
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRIGLSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G01800 0.5kb upstream 0.5kb upstream 2803 true A07: 17036401-17039203 Brassica rapa FPsc
Brara.G01800 0.5kb upstream 0.5kb upstream 500 false A07: 17036401-17036900 Brassica rapa FPsc
Brara.G01800 0.5kb downstream 0.5kb downstream 2803 true A07: 17036901-17039703 Brassica rapa FPsc
Brara.G01800 0.5kb downstream 0.5kb downstream 500 false A07: 17039204-17039703 Brassica rapa FPsc
Brara.G01800 1.0kb upstream 1.0kb upstream 3303 true A07: 17035901-17039203 Brassica rapa FPsc
Brara.G01800 1.0kb upstream 1.0kb upstream 1000 false A07: 17035901-17036900 Brassica rapa FPsc
Brara.G01800 1.0kb downstream 1.0kb downstream 3303 true A07: 17036901-17040203 Brassica rapa FPsc
Brara.G01800 1.0kb downstream 1.0kb downstream 1000 false A07: 17039204-17040203 Brassica rapa FPsc
Brara.G01800 2.0kb upstream 2.0kb upstream 4303 true A07: 17034901-17039203 Brassica rapa FPsc
Brara.G01800 2.0kb upstream 2.0kb upstream 2000 false A07: 17034901-17036900 Brassica rapa FPsc
Brara.G01800 2.0kb downstream 2.0kb downstream 4303 true A07: 17036901-17041203 Brassica rapa FPsc
Brara.G01800 2.0kb downstream 2.0kb downstream 2000 false A07: 17039204-17041203 Brassica rapa FPsc
Brara.G01800 5.0kb upstream 5.0kb upstream 7303 true A07: 17031901-17039203 Brassica rapa FPsc
Brara.G01800 5.0kb upstream 5.0kb upstream 5000 false A07: 17031901-17036900 Brassica rapa FPsc
Brara.G01800 5.0kb downstream 5.0kb downstream 7303 true A07: 17036901-17044203 Brassica rapa FPsc
Brara.G01800 5.0kb downstream 5.0kb downstream 5000 false A07: 17039204-17044203 Brassica rapa FPsc
Brara.G01800 10.0kb upstream 10.0kb upstream 12303 true A07: 17026901-17039203 Brassica rapa FPsc
Brara.G01800 10.0kb upstream 10.0kb upstream 10000 false A07: 17026901-17036900 Brassica rapa FPsc
Brara.G01800 10.0kb downstream 10.0kb downstream 12303 true A07: 17036901-17049203 Brassica rapa FPsc
Brara.G01800 10.0kb downstream 10.0kb downstream 10000 false A07: 17039204-17049203 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367975 5261 Brassicaceae View MSA
123832821 5264 Brassicales-Malvales View MSA
124342995 5266 SBM View MSA
124241602 5268 Malvidae View MSA
124061101 5270 Rosid View MSA
123739708 5271 Pentapetalae View MSA
122787223 5272 Eudicot View MSA
122041787 5273 Angiosperm View MSA
121351488 5274 Embryophyte View MSA
123382186 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier