Gene : Brara.A03658 B. rapa FPsc v1.3
Defline:  (1 of 3) 1.1.1.25 - Shikimate dehydrogenase / Shikimate:NADP(+) oxidoreductase Genomic Order:  3658
Name:  ? Brara.A03658 Secondary Identifier:  ? PAC:30637505
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc ARO-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6163 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A03658 0.5kb upstream 0.5kb upstream 4419 true A01: 29430460-29434878 Brassica rapa FPsc
Brara.A03658 0.5kb upstream 0.5kb upstream 500 false A01: 29434379-29434878 Brassica rapa FPsc
Brara.A03658 0.5kb downstream 0.5kb downstream 4419 true A01: 29429960-29434378 Brassica rapa FPsc
Brara.A03658 0.5kb downstream 0.5kb downstream 500 false A01: 29429960-29430459 Brassica rapa FPsc
Brara.A03658 1.0kb upstream 1.0kb upstream 4919 true A01: 29430460-29435378 Brassica rapa FPsc
Brara.A03658 1.0kb upstream 1.0kb upstream 1000 false A01: 29434379-29435378 Brassica rapa FPsc
Brara.A03658 1.0kb downstream 1.0kb downstream 4919 true A01: 29429460-29434378 Brassica rapa FPsc
Brara.A03658 1.0kb downstream 1.0kb downstream 1000 false A01: 29429460-29430459 Brassica rapa FPsc
Brara.A03658 2.0kb upstream 2.0kb upstream 5919 true A01: 29430460-29436378 Brassica rapa FPsc
Brara.A03658 2.0kb upstream 2.0kb upstream 2000 false A01: 29434379-29436378 Brassica rapa FPsc
Brara.A03658 2.0kb downstream 2.0kb downstream 5919 true A01: 29428460-29434378 Brassica rapa FPsc
Brara.A03658 2.0kb downstream 2.0kb downstream 2000 false A01: 29428460-29430459 Brassica rapa FPsc
Brara.A03658 5.0kb upstream 5.0kb upstream 8919 true A01: 29430460-29439378 Brassica rapa FPsc
Brara.A03658 5.0kb upstream 5.0kb upstream 5000 false A01: 29434379-29439378 Brassica rapa FPsc
Brara.A03658 5.0kb downstream 5.0kb downstream 8919 true A01: 29425460-29434378 Brassica rapa FPsc
Brara.A03658 5.0kb downstream 5.0kb downstream 5000 false A01: 29425460-29430459 Brassica rapa FPsc
Brara.A03658 10.0kb upstream 10.0kb upstream 13919 true A01: 29430460-29444378 Brassica rapa FPsc
Brara.A03658 10.0kb upstream 10.0kb upstream 10000 false A01: 29434379-29444378 Brassica rapa FPsc
Brara.A03658 10.0kb downstream 10.0kb downstream 13919 true A01: 29420460-29434378 Brassica rapa FPsc
Brara.A03658 10.0kb downstream 10.0kb downstream 10000 false A01: 29420460-29430459 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372861 5261 Brassicaceae View MSA
123830471 5264 Brassicales-Malvales View MSA
124341830 5266 SBM View MSA
124242776 5268 Malvidae View MSA
124068153 5270 Rosid View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier