Gene : Brara.H00334 B. rapa FPsc v1.3
Defline:  (1 of 2) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase Genomic Order:  334
Name:  ? Brara.H00334 Secondary Identifier:  ? PAC:30648843
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc ARO-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6163 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H00334 0.5kb upstream 0.5kb upstream 3480 true A08: 3133056-3136535 Brassica rapa FPsc
Brara.H00334 0.5kb upstream 0.5kb upstream 500 false A08: 3133056-3133555 Brassica rapa FPsc
Brara.H00334 0.5kb downstream 0.5kb downstream 3480 true A08: 3133556-3137035 Brassica rapa FPsc
Brara.H00334 0.5kb downstream 0.5kb downstream 500 false A08: 3136536-3137035 Brassica rapa FPsc
Brara.H00334 1.0kb upstream 1.0kb upstream 3980 true A08: 3132556-3136535 Brassica rapa FPsc
Brara.H00334 1.0kb upstream 1.0kb upstream 1000 false A08: 3132556-3133555 Brassica rapa FPsc
Brara.H00334 1.0kb downstream 1.0kb downstream 3980 true A08: 3133556-3137535 Brassica rapa FPsc
Brara.H00334 1.0kb downstream 1.0kb downstream 1000 false A08: 3136536-3137535 Brassica rapa FPsc
Brara.H00334 2.0kb upstream 2.0kb upstream 4980 true A08: 3131556-3136535 Brassica rapa FPsc
Brara.H00334 2.0kb upstream 2.0kb upstream 2000 false A08: 3131556-3133555 Brassica rapa FPsc
Brara.H00334 2.0kb downstream 2.0kb downstream 4980 true A08: 3133556-3138535 Brassica rapa FPsc
Brara.H00334 2.0kb downstream 2.0kb downstream 2000 false A08: 3136536-3138535 Brassica rapa FPsc
Brara.H00334 5.0kb upstream 5.0kb upstream 7980 true A08: 3128556-3136535 Brassica rapa FPsc
Brara.H00334 5.0kb upstream 5.0kb upstream 5000 false A08: 3128556-3133555 Brassica rapa FPsc
Brara.H00334 5.0kb downstream 5.0kb downstream 7980 true A08: 3133556-3141535 Brassica rapa FPsc
Brara.H00334 5.0kb downstream 5.0kb downstream 5000 false A08: 3136536-3141535 Brassica rapa FPsc
Brara.H00334 10.0kb upstream 10.0kb upstream 12980 true A08: 3123556-3136535 Brassica rapa FPsc
Brara.H00334 10.0kb upstream 10.0kb upstream 10000 false A08: 3123556-3133555 Brassica rapa FPsc
Brara.H00334 10.0kb downstream 10.0kb downstream 12980 true A08: 3133556-3146535 Brassica rapa FPsc
Brara.H00334 10.0kb downstream 10.0kb downstream 10000 false A08: 3136536-3146535 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041230 5273 Angiosperm View MSA
122374629 5261 Brassicaceae View MSA
123827910 5264 Brassicales-Malvales View MSA
124346296 5266 SBM View MSA
124238630 5268 Malvidae View MSA
124061876 5270 Rosid View MSA
123747909 5271 Pentapetalae View MSA
122787011 5272 Eudicot View MSA
121346403 5274 Embryophyte View MSA
123428194 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier