Gene : Brara.H01190 B. rapa FPsc v1.3
Defline:  (1 of 4) 2.5.1.21 - Squalene synthase / Squalene synthetase Genomic Order:  1190
Name:  ? Brara.H01190 Secondary Identifier:  ? PAC:30648127
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-2541 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5670 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H01190 0.5kb upstream 0.5kb upstream 3849 true A08: 13438744-13442592 Brassica rapa FPsc
Brara.H01190 0.5kb upstream 0.5kb upstream 500 false A08: 13442093-13442592 Brassica rapa FPsc
Brara.H01190 0.5kb downstream 0.5kb downstream 3849 true A08: 13438244-13442092 Brassica rapa FPsc
Brara.H01190 0.5kb downstream 0.5kb downstream 500 false A08: 13438244-13438743 Brassica rapa FPsc
Brara.H01190 1.0kb upstream 1.0kb upstream 4349 true A08: 13438744-13443092 Brassica rapa FPsc
Brara.H01190 1.0kb upstream 1.0kb upstream 1000 false A08: 13442093-13443092 Brassica rapa FPsc
Brara.H01190 1.0kb downstream 1.0kb downstream 4349 true A08: 13437744-13442092 Brassica rapa FPsc
Brara.H01190 1.0kb downstream 1.0kb downstream 1000 false A08: 13437744-13438743 Brassica rapa FPsc
Brara.H01190 2.0kb upstream 2.0kb upstream 5349 true A08: 13438744-13444092 Brassica rapa FPsc
Brara.H01190 2.0kb upstream 2.0kb upstream 2000 false A08: 13442093-13444092 Brassica rapa FPsc
Brara.H01190 2.0kb downstream 2.0kb downstream 5349 true A08: 13436744-13442092 Brassica rapa FPsc
Brara.H01190 2.0kb downstream 2.0kb downstream 2000 false A08: 13436744-13438743 Brassica rapa FPsc
Brara.H01190 5.0kb upstream 5.0kb upstream 8349 true A08: 13438744-13447092 Brassica rapa FPsc
Brara.H01190 5.0kb upstream 5.0kb upstream 5000 false A08: 13442093-13447092 Brassica rapa FPsc
Brara.H01190 5.0kb downstream 5.0kb downstream 8349 true A08: 13433744-13442092 Brassica rapa FPsc
Brara.H01190 5.0kb downstream 5.0kb downstream 5000 false A08: 13433744-13438743 Brassica rapa FPsc
Brara.H01190 10.0kb upstream 10.0kb upstream 13349 true A08: 13438744-13452092 Brassica rapa FPsc
Brara.H01190 10.0kb upstream 10.0kb upstream 10000 false A08: 13442093-13452092 Brassica rapa FPsc
Brara.H01190 10.0kb downstream 10.0kb downstream 13349 true A08: 13428744-13442092 Brassica rapa FPsc
Brara.H01190 10.0kb downstream 10.0kb downstream 10000 false A08: 13428744-13438743 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363626 5261 Brassicaceae View MSA
123827932 5264 Brassicales-Malvales View MSA
124340465 5266 SBM View MSA
124243687 5268 Malvidae View MSA
124065005 5270 Rosid View MSA
123747848 5271 Pentapetalae View MSA
122787825 5272 Eudicot View MSA
122042609 5273 Angiosperm View MSA
121351426 5274 Embryophyte View MSA
123424778 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier