Gene : Brara.H00475 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11680//PTHR11680:SF11 - SERINE HYDROXYMETHYLTRANSFERASE Genomic Order:  475
Name:  ? Brara.H00475 Secondary Identifier:  ? PAC:30648214
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLYSYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-2161 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-3841 Brassica rapa FPsc pathologic  
BrapaFPsc SER-GLYSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H00475 0.5kb upstream 0.5kb upstream 2506 true A08: 5074996-5077501 Brassica rapa FPsc
Brara.H00475 0.5kb upstream 0.5kb upstream 500 false A08: 5074996-5075495 Brassica rapa FPsc
Brara.H00475 0.5kb downstream 0.5kb downstream 2506 true A08: 5075496-5078001 Brassica rapa FPsc
Brara.H00475 0.5kb downstream 0.5kb downstream 500 false A08: 5077502-5078001 Brassica rapa FPsc
Brara.H00475 1.0kb upstream 1.0kb upstream 3006 true A08: 5074496-5077501 Brassica rapa FPsc
Brara.H00475 1.0kb upstream 1.0kb upstream 1000 false A08: 5074496-5075495 Brassica rapa FPsc
Brara.H00475 1.0kb downstream 1.0kb downstream 3006 true A08: 5075496-5078501 Brassica rapa FPsc
Brara.H00475 1.0kb downstream 1.0kb downstream 1000 false A08: 5077502-5078501 Brassica rapa FPsc
Brara.H00475 2.0kb upstream 2.0kb upstream 4006 true A08: 5073496-5077501 Brassica rapa FPsc
Brara.H00475 2.0kb upstream 2.0kb upstream 2000 false A08: 5073496-5075495 Brassica rapa FPsc
Brara.H00475 2.0kb downstream 2.0kb downstream 4006 true A08: 5075496-5079501 Brassica rapa FPsc
Brara.H00475 2.0kb downstream 2.0kb downstream 2000 false A08: 5077502-5079501 Brassica rapa FPsc
Brara.H00475 5.0kb upstream 5.0kb upstream 7006 true A08: 5070496-5077501 Brassica rapa FPsc
Brara.H00475 5.0kb upstream 5.0kb upstream 5000 false A08: 5070496-5075495 Brassica rapa FPsc
Brara.H00475 5.0kb downstream 5.0kb downstream 7006 true A08: 5075496-5082501 Brassica rapa FPsc
Brara.H00475 5.0kb downstream 5.0kb downstream 5000 false A08: 5077502-5082501 Brassica rapa FPsc
Brara.H00475 10.0kb upstream 10.0kb upstream 12006 true A08: 5065496-5077501 Brassica rapa FPsc
Brara.H00475 10.0kb upstream 10.0kb upstream 10000 false A08: 5065496-5075495 Brassica rapa FPsc
Brara.H00475 10.0kb downstream 10.0kb downstream 12006 true A08: 5075496-5087501 Brassica rapa FPsc
Brara.H00475 10.0kb downstream 10.0kb downstream 10000 false A08: 5077502-5087501 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381191 5261 Brassicaceae View MSA
123836002 5264 Brassicales-Malvales View MSA
124338448 5266 SBM View MSA
124241097 5268 Malvidae View MSA
124067933 5270 Rosid View MSA
123746459 5271 Pentapetalae View MSA
122786293 5272 Eudicot View MSA
122042145 5273 Angiosperm View MSA
121347378 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier