Gene : Brara.H00487 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11946//PTHR11946:SF78 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES Genomic Order:  487
Name:  ? Brara.H00487 Secondary Identifier:  ? PAC:30649643
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H00487 0.5kb upstream 0.5kb upstream 4984 true A08: 5223493-5228476 Brassica rapa FPsc
Brara.H00487 0.5kb upstream 0.5kb upstream 500 false A08: 5223493-5223992 Brassica rapa FPsc
Brara.H00487 0.5kb downstream 0.5kb downstream 4984 true A08: 5223993-5228976 Brassica rapa FPsc
Brara.H00487 0.5kb downstream 0.5kb downstream 500 false A08: 5228477-5228976 Brassica rapa FPsc
Brara.H00487 1.0kb upstream 1.0kb upstream 5484 true A08: 5222993-5228476 Brassica rapa FPsc
Brara.H00487 1.0kb upstream 1.0kb upstream 1000 false A08: 5222993-5223992 Brassica rapa FPsc
Brara.H00487 1.0kb downstream 1.0kb downstream 5484 true A08: 5223993-5229476 Brassica rapa FPsc
Brara.H00487 1.0kb downstream 1.0kb downstream 1000 false A08: 5228477-5229476 Brassica rapa FPsc
Brara.H00487 2.0kb upstream 2.0kb upstream 6484 true A08: 5221993-5228476 Brassica rapa FPsc
Brara.H00487 2.0kb upstream 2.0kb upstream 2000 false A08: 5221993-5223992 Brassica rapa FPsc
Brara.H00487 2.0kb downstream 2.0kb downstream 6484 true A08: 5223993-5230476 Brassica rapa FPsc
Brara.H00487 2.0kb downstream 2.0kb downstream 2000 false A08: 5228477-5230476 Brassica rapa FPsc
Brara.H00487 5.0kb upstream 5.0kb upstream 9484 true A08: 5218993-5228476 Brassica rapa FPsc
Brara.H00487 5.0kb upstream 5.0kb upstream 5000 false A08: 5218993-5223992 Brassica rapa FPsc
Brara.H00487 5.0kb downstream 5.0kb downstream 9484 true A08: 5223993-5233476 Brassica rapa FPsc
Brara.H00487 5.0kb downstream 5.0kb downstream 5000 false A08: 5228477-5233476 Brassica rapa FPsc
Brara.H00487 10.0kb upstream 10.0kb upstream 14484 true A08: 5213993-5228476 Brassica rapa FPsc
Brara.H00487 10.0kb upstream 10.0kb upstream 10000 false A08: 5213993-5223992 Brassica rapa FPsc
Brara.H00487 10.0kb downstream 10.0kb downstream 14484 true A08: 5223993-5238476 Brassica rapa FPsc
Brara.H00487 10.0kb downstream 10.0kb downstream 10000 false A08: 5228477-5238476 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367230 5261 Brassicaceae View MSA
123828718 5264 Brassicales-Malvales View MSA
124338406 5266 SBM View MSA
124247313 5268 Malvidae View MSA
124066402 5270 Rosid View MSA
123739463 5271 Pentapetalae View MSA
122793532 5272 Eudicot View MSA
122041539 5273 Angiosperm View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier