Gene : Brara.H00556 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR13112 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN Genomic Order:  556
Name:  ? Brara.H00556 Secondary Identifier:  ? PAC:30650172
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H00556 0.5kb upstream 0.5kb upstream 3626 true A08: 6711719-6715344 Brassica rapa FPsc
Brara.H00556 0.5kb upstream 0.5kb upstream 500 false A08: 6711719-6712218 Brassica rapa FPsc
Brara.H00556 0.5kb downstream 0.5kb downstream 3626 true A08: 6712219-6715844 Brassica rapa FPsc
Brara.H00556 0.5kb downstream 0.5kb downstream 500 false A08: 6715345-6715844 Brassica rapa FPsc
Brara.H00556 1.0kb upstream 1.0kb upstream 4126 true A08: 6711219-6715344 Brassica rapa FPsc
Brara.H00556 1.0kb upstream 1.0kb upstream 1000 false A08: 6711219-6712218 Brassica rapa FPsc
Brara.H00556 1.0kb downstream 1.0kb downstream 4126 true A08: 6712219-6716344 Brassica rapa FPsc
Brara.H00556 1.0kb downstream 1.0kb downstream 1000 false A08: 6715345-6716344 Brassica rapa FPsc
Brara.H00556 2.0kb upstream 2.0kb upstream 5126 true A08: 6710219-6715344 Brassica rapa FPsc
Brara.H00556 2.0kb upstream 2.0kb upstream 2000 false A08: 6710219-6712218 Brassica rapa FPsc
Brara.H00556 2.0kb downstream 2.0kb downstream 5126 true A08: 6712219-6717344 Brassica rapa FPsc
Brara.H00556 2.0kb downstream 2.0kb downstream 2000 false A08: 6715345-6717344 Brassica rapa FPsc
Brara.H00556 5.0kb upstream 5.0kb upstream 8126 true A08: 6707219-6715344 Brassica rapa FPsc
Brara.H00556 5.0kb upstream 5.0kb upstream 5000 false A08: 6707219-6712218 Brassica rapa FPsc
Brara.H00556 5.0kb downstream 5.0kb downstream 8126 true A08: 6712219-6720344 Brassica rapa FPsc
Brara.H00556 5.0kb downstream 5.0kb downstream 5000 false A08: 6715345-6720344 Brassica rapa FPsc
Brara.H00556 10.0kb upstream 10.0kb upstream 13126 true A08: 6702219-6715344 Brassica rapa FPsc
Brara.H00556 10.0kb upstream 10.0kb upstream 10000 false A08: 6702219-6712218 Brassica rapa FPsc
Brara.H00556 10.0kb downstream 10.0kb downstream 13126 true A08: 6712219-6725344 Brassica rapa FPsc
Brara.H00556 10.0kb downstream 10.0kb downstream 10000 false A08: 6715345-6725344 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041498 5273 Angiosperm View MSA
122355739 5261 Brassicaceae Singleton cluster - no MSA
123793933 5264 Brassicales-Malvales Singleton cluster - no MSA
124291757 5266 SBM Singleton cluster - no MSA
124256009 5268 Malvidae View MSA
123953389 5270 Rosid View MSA
123750498 5271 Pentapetalae View MSA
122788511 5272 Eudicot View MSA
121351189 5274 Embryophyte View MSA
123425600 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier