Gene : Brara.B01224 B. rapa FPsc v1.3
Defline:  (1 of 6) PF00097//PF01485 - Zinc finger, C3HC4 type (RING finger) (zf-C3HC4) // IBR domain, a half RING-finger domain (IBR) Genomic Order:  1224
Name:  ? Brara.B01224 Secondary Identifier:  ? PAC:30610415
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B01224 0.5kb upstream 0.5kb upstream 1372 true A02: 6220852-6222223 Brassica rapa FPsc
Brara.B01224 0.5kb upstream 0.5kb upstream 500 false A02: 6221724-6222223 Brassica rapa FPsc
Brara.B01224 0.5kb downstream 0.5kb downstream 1372 true A02: 6220352-6221723 Brassica rapa FPsc
Brara.B01224 0.5kb downstream 0.5kb downstream 500 false A02: 6220352-6220851 Brassica rapa FPsc
Brara.B01224 1.0kb upstream 1.0kb upstream 1872 true A02: 6220852-6222723 Brassica rapa FPsc
Brara.B01224 1.0kb upstream 1.0kb upstream 1000 false A02: 6221724-6222723 Brassica rapa FPsc
Brara.B01224 1.0kb downstream 1.0kb downstream 1872 true A02: 6219852-6221723 Brassica rapa FPsc
Brara.B01224 1.0kb downstream 1.0kb downstream 1000 false A02: 6219852-6220851 Brassica rapa FPsc
Brara.B01224 2.0kb upstream 2.0kb upstream 2872 true A02: 6220852-6223723 Brassica rapa FPsc
Brara.B01224 2.0kb upstream 2.0kb upstream 2000 false A02: 6221724-6223723 Brassica rapa FPsc
Brara.B01224 2.0kb downstream 2.0kb downstream 2872 true A02: 6218852-6221723 Brassica rapa FPsc
Brara.B01224 2.0kb downstream 2.0kb downstream 2000 false A02: 6218852-6220851 Brassica rapa FPsc
Brara.B01224 5.0kb upstream 5.0kb upstream 5872 true A02: 6220852-6226723 Brassica rapa FPsc
Brara.B01224 5.0kb upstream 5.0kb upstream 5000 false A02: 6221724-6226723 Brassica rapa FPsc
Brara.B01224 5.0kb downstream 5.0kb downstream 5872 true A02: 6215852-6221723 Brassica rapa FPsc
Brara.B01224 5.0kb downstream 5.0kb downstream 5000 false A02: 6215852-6220851 Brassica rapa FPsc
Brara.B01224 10.0kb upstream 10.0kb upstream 10872 true A02: 6220852-6231723 Brassica rapa FPsc
Brara.B01224 10.0kb upstream 10.0kb upstream 10000 false A02: 6221724-6231723 Brassica rapa FPsc
Brara.B01224 10.0kb downstream 10.0kb downstream 10872 true A02: 6210852-6221723 Brassica rapa FPsc
Brara.B01224 10.0kb downstream 10.0kb downstream 10000 false A02: 6210852-6220851 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122359967 5261 Brassicaceae View MSA
123797762 5264 Brassicales-Malvales View MSA
124351963 5266 SBM View MSA
124247335 5268 Malvidae View MSA
124068077 5270 Rosid View MSA
123752192 5271 Pentapetalae View MSA
122796967 5272 Eudicot View MSA
122046828 5273 Angiosperm View MSA
123429065 5275 Viridiplantae View MSA
121348618 5274 Embryophyte View MSA

0 Rna Seq Expressions

1 Strain

DB identifier