Gene : Brara.B01738 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR34790:SF1 - PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC Genomic Order:  1738
Name:  ? Brara.B01738 Secondary Identifier:  ? PAC:30607118
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PHOTOALL-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-101 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B01738 0.5kb upstream 0.5kb upstream 1436 true A02: 10184335-10185770 Brassica rapa FPsc
Brara.B01738 0.5kb upstream 0.5kb upstream 500 false A02: 10185271-10185770 Brassica rapa FPsc
Brara.B01738 0.5kb downstream 0.5kb downstream 1436 true A02: 10183835-10185270 Brassica rapa FPsc
Brara.B01738 0.5kb downstream 0.5kb downstream 500 false A02: 10183835-10184334 Brassica rapa FPsc
Brara.B01738 1.0kb upstream 1.0kb upstream 1936 true A02: 10184335-10186270 Brassica rapa FPsc
Brara.B01738 1.0kb upstream 1.0kb upstream 1000 false A02: 10185271-10186270 Brassica rapa FPsc
Brara.B01738 1.0kb downstream 1.0kb downstream 1936 true A02: 10183335-10185270 Brassica rapa FPsc
Brara.B01738 1.0kb downstream 1.0kb downstream 1000 false A02: 10183335-10184334 Brassica rapa FPsc
Brara.B01738 2.0kb upstream 2.0kb upstream 2936 true A02: 10184335-10187270 Brassica rapa FPsc
Brara.B01738 2.0kb upstream 2.0kb upstream 2000 false A02: 10185271-10187270 Brassica rapa FPsc
Brara.B01738 2.0kb downstream 2.0kb downstream 2936 true A02: 10182335-10185270 Brassica rapa FPsc
Brara.B01738 2.0kb downstream 2.0kb downstream 2000 false A02: 10182335-10184334 Brassica rapa FPsc
Brara.B01738 5.0kb upstream 5.0kb upstream 5936 true A02: 10184335-10190270 Brassica rapa FPsc
Brara.B01738 5.0kb upstream 5.0kb upstream 5000 false A02: 10185271-10190270 Brassica rapa FPsc
Brara.B01738 5.0kb downstream 5.0kb downstream 5936 true A02: 10179335-10185270 Brassica rapa FPsc
Brara.B01738 5.0kb downstream 5.0kb downstream 5000 false A02: 10179335-10184334 Brassica rapa FPsc
Brara.B01738 10.0kb upstream 10.0kb upstream 10936 true A02: 10184335-10195270 Brassica rapa FPsc
Brara.B01738 10.0kb upstream 10.0kb upstream 10000 false A02: 10185271-10195270 Brassica rapa FPsc
Brara.B01738 10.0kb downstream 10.0kb downstream 10936 true A02: 10174335-10185270 Brassica rapa FPsc
Brara.B01738 10.0kb downstream 10.0kb downstream 10000 false A02: 10174335-10184334 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122344553 5261 Brassicaceae Singleton cluster - no MSA
123839306 5264 Brassicales-Malvales View MSA
124346092 5266 SBM View MSA
124244103 5268 Malvidae View MSA
124068149 5270 Rosid View MSA
123737018 5271 Pentapetalae View MSA
122795977 5272 Eudicot View MSA
122044260 5273 Angiosperm View MSA
121349394 5274 Embryophyte View MSA
123426328 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier