Gene : Brara.E00389 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR32183:SF6 - THIOCYANATE METHYLTRANSFERASE 1-RELATED Genomic Order:  389
Name:  ? Brara.E00389 Secondary Identifier:  ? PAC:30624536
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6736 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6842 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.E00389 0.5kb upstream 0.5kb upstream 2575 true A05: 2109485-2112059 Brassica rapa FPsc
Brara.E00389 0.5kb upstream 0.5kb upstream 500 false A05: 2111560-2112059 Brassica rapa FPsc
Brara.E00389 0.5kb downstream 0.5kb downstream 2575 true A05: 2108985-2111559 Brassica rapa FPsc
Brara.E00389 0.5kb downstream 0.5kb downstream 500 false A05: 2108985-2109484 Brassica rapa FPsc
Brara.E00389 1.0kb upstream 1.0kb upstream 3075 true A05: 2109485-2112559 Brassica rapa FPsc
Brara.E00389 1.0kb upstream 1.0kb upstream 1000 false A05: 2111560-2112559 Brassica rapa FPsc
Brara.E00389 1.0kb downstream 1.0kb downstream 3075 true A05: 2108485-2111559 Brassica rapa FPsc
Brara.E00389 1.0kb downstream 1.0kb downstream 1000 false A05: 2108485-2109484 Brassica rapa FPsc
Brara.E00389 2.0kb upstream 2.0kb upstream 4075 true A05: 2109485-2113559 Brassica rapa FPsc
Brara.E00389 2.0kb upstream 2.0kb upstream 2000 false A05: 2111560-2113559 Brassica rapa FPsc
Brara.E00389 2.0kb downstream 2.0kb downstream 4075 true A05: 2107485-2111559 Brassica rapa FPsc
Brara.E00389 2.0kb downstream 2.0kb downstream 2000 false A05: 2107485-2109484 Brassica rapa FPsc
Brara.E00389 5.0kb upstream 5.0kb upstream 7075 true A05: 2109485-2116559 Brassica rapa FPsc
Brara.E00389 5.0kb upstream 5.0kb upstream 5000 false A05: 2111560-2116559 Brassica rapa FPsc
Brara.E00389 5.0kb downstream 5.0kb downstream 7075 true A05: 2104485-2111559 Brassica rapa FPsc
Brara.E00389 5.0kb downstream 5.0kb downstream 5000 false A05: 2104485-2109484 Brassica rapa FPsc
Brara.E00389 10.0kb upstream 10.0kb upstream 12075 true A05: 2109485-2121559 Brassica rapa FPsc
Brara.E00389 10.0kb upstream 10.0kb upstream 10000 false A05: 2111560-2121559 Brassica rapa FPsc
Brara.E00389 10.0kb downstream 10.0kb downstream 12075 true A05: 2099485-2111559 Brassica rapa FPsc
Brara.E00389 10.0kb downstream 10.0kb downstream 10000 false A05: 2099485-2109484 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040998 5273 Angiosperm View MSA
122379294 5261 Brassicaceae View MSA
123802194 5264 Brassicales-Malvales View MSA
124299408 5266 SBM View MSA
124249928 5268 Malvidae View MSA
124062480 5270 Rosid View MSA
123741516 5271 Pentapetalae View MSA
122787358 5272 Eudicot View MSA
121346954 5274 Embryophyte View MSA
123424412 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier