Gene : Brara.H02469 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR11771:SF38 - LIPOXYGENASE 3, CHLOROPLASTIC-RELATED Genomic Order:  2469
Name:  ? Brara.H02469 Secondary Identifier:  ? PAC:30647016
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5409 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5410 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-735 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H02469 0.5kb upstream 0.5kb upstream 4808 true A08: 20592797-20597604 Brassica rapa FPsc
Brara.H02469 0.5kb upstream 0.5kb upstream 500 false A08: 20597105-20597604 Brassica rapa FPsc
Brara.H02469 0.5kb downstream 0.5kb downstream 4808 true A08: 20592297-20597104 Brassica rapa FPsc
Brara.H02469 0.5kb downstream 0.5kb downstream 500 false A08: 20592297-20592796 Brassica rapa FPsc
Brara.H02469 1.0kb upstream 1.0kb upstream 5308 true A08: 20592797-20598104 Brassica rapa FPsc
Brara.H02469 1.0kb upstream 1.0kb upstream 1000 false A08: 20597105-20598104 Brassica rapa FPsc
Brara.H02469 1.0kb downstream 1.0kb downstream 5308 true A08: 20591797-20597104 Brassica rapa FPsc
Brara.H02469 1.0kb downstream 1.0kb downstream 1000 false A08: 20591797-20592796 Brassica rapa FPsc
Brara.H02469 2.0kb upstream 2.0kb upstream 6308 true A08: 20592797-20599104 Brassica rapa FPsc
Brara.H02469 2.0kb upstream 2.0kb upstream 2000 false A08: 20597105-20599104 Brassica rapa FPsc
Brara.H02469 2.0kb downstream 2.0kb downstream 6308 true A08: 20590797-20597104 Brassica rapa FPsc
Brara.H02469 2.0kb downstream 2.0kb downstream 2000 false A08: 20590797-20592796 Brassica rapa FPsc
Brara.H02469 5.0kb upstream 5.0kb upstream 9308 true A08: 20592797-20602104 Brassica rapa FPsc
Brara.H02469 5.0kb upstream 5.0kb upstream 5000 false A08: 20597105-20602104 Brassica rapa FPsc
Brara.H02469 5.0kb downstream 5.0kb downstream 9308 true A08: 20587797-20597104 Brassica rapa FPsc
Brara.H02469 5.0kb downstream 5.0kb downstream 5000 false A08: 20587797-20592796 Brassica rapa FPsc
Brara.H02469 10.0kb upstream 10.0kb upstream 14308 true A08: 20592797-20607104 Brassica rapa FPsc
Brara.H02469 10.0kb upstream 10.0kb upstream 10000 false A08: 20597105-20607104 Brassica rapa FPsc
Brara.H02469 10.0kb downstream 10.0kb downstream 14308 true A08: 20582797-20597104 Brassica rapa FPsc
Brara.H02469 10.0kb downstream 10.0kb downstream 10000 false A08: 20582797-20592796 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122354807 5261 Brassicaceae Singleton cluster - no MSA
123842661 5264 Brassicales-Malvales View MSA
124323679 5266 SBM View MSA
124254155 5268 Malvidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

1 Strain

DB identifier