Gene : Brara.I00527 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR11062:SF108 - EXOSTOSIN FAMILY PROTEIN Genomic Order:  527
Name:  ? Brara.I00527 Secondary Identifier:  ? PAC:30644979
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5980 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I00527 0.5kb upstream 0.5kb upstream 3075 true A09: 2937474-2940548 Brassica rapa FPsc
Brara.I00527 0.5kb upstream 0.5kb upstream 500 false A09: 2937474-2937973 Brassica rapa FPsc
Brara.I00527 0.5kb downstream 0.5kb downstream 3075 true A09: 2937974-2941048 Brassica rapa FPsc
Brara.I00527 0.5kb downstream 0.5kb downstream 500 false A09: 2940549-2941048 Brassica rapa FPsc
Brara.I00527 1.0kb upstream 1.0kb upstream 3575 true A09: 2936974-2940548 Brassica rapa FPsc
Brara.I00527 1.0kb upstream 1.0kb upstream 1000 false A09: 2936974-2937973 Brassica rapa FPsc
Brara.I00527 1.0kb downstream 1.0kb downstream 3575 true A09: 2937974-2941548 Brassica rapa FPsc
Brara.I00527 1.0kb downstream 1.0kb downstream 1000 false A09: 2940549-2941548 Brassica rapa FPsc
Brara.I00527 2.0kb upstream 2.0kb upstream 4575 true A09: 2935974-2940548 Brassica rapa FPsc
Brara.I00527 2.0kb upstream 2.0kb upstream 2000 false A09: 2935974-2937973 Brassica rapa FPsc
Brara.I00527 2.0kb downstream 2.0kb downstream 4575 true A09: 2937974-2942548 Brassica rapa FPsc
Brara.I00527 2.0kb downstream 2.0kb downstream 2000 false A09: 2940549-2942548 Brassica rapa FPsc
Brara.I00527 5.0kb upstream 5.0kb upstream 7575 true A09: 2932974-2940548 Brassica rapa FPsc
Brara.I00527 5.0kb upstream 5.0kb upstream 5000 false A09: 2932974-2937973 Brassica rapa FPsc
Brara.I00527 5.0kb downstream 5.0kb downstream 7575 true A09: 2937974-2945548 Brassica rapa FPsc
Brara.I00527 5.0kb downstream 5.0kb downstream 5000 false A09: 2940549-2945548 Brassica rapa FPsc
Brara.I00527 10.0kb upstream 10.0kb upstream 12575 true A09: 2927974-2940548 Brassica rapa FPsc
Brara.I00527 10.0kb upstream 10.0kb upstream 10000 false A09: 2927974-2937973 Brassica rapa FPsc
Brara.I00527 10.0kb downstream 10.0kb downstream 12575 true A09: 2937974-2950548 Brassica rapa FPsc
Brara.I00527 10.0kb downstream 10.0kb downstream 10000 false A09: 2940549-2950548 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792376 5273 Angiosperm View MSA
122354289 5261 Brassicaceae Singleton cluster - no MSA
123792710 5264 Brassicales-Malvales Singleton cluster - no MSA
124290578 5266 SBM Singleton cluster - no MSA
124250724 5268 Malvidae View MSA
124067296 5270 Rosid View MSA
123744502 5271 Pentapetalae View MSA
122797581 5272 Eudicot View MSA
121349832 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier