Gene : Brara.B02702 B. rapa FPsc v1.3
Defline:  (1 of 2) 2.3.3.10 - Hydroxymethylglutaryl-CoA synthase / Hydroxymethylglutaryl coenzyme alpha-condensing enzyme Genomic Order:  2702
Name:  ? Brara.B02702 Secondary Identifier:  ? PAC:30610589
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5910 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-922 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B02702 0.5kb upstream 0.5kb upstream 3720 true A02: 19803797-19807516 Brassica rapa FPsc
Brara.B02702 0.5kb upstream 0.5kb upstream 500 false A02: 19807017-19807516 Brassica rapa FPsc
Brara.B02702 0.5kb downstream 0.5kb downstream 3720 true A02: 19803297-19807016 Brassica rapa FPsc
Brara.B02702 0.5kb downstream 0.5kb downstream 500 false A02: 19803297-19803796 Brassica rapa FPsc
Brara.B02702 1.0kb upstream 1.0kb upstream 4220 true A02: 19803797-19808016 Brassica rapa FPsc
Brara.B02702 1.0kb upstream 1.0kb upstream 1000 false A02: 19807017-19808016 Brassica rapa FPsc
Brara.B02702 1.0kb downstream 1.0kb downstream 4220 true A02: 19802797-19807016 Brassica rapa FPsc
Brara.B02702 1.0kb downstream 1.0kb downstream 1000 false A02: 19802797-19803796 Brassica rapa FPsc
Brara.B02702 2.0kb upstream 2.0kb upstream 5220 true A02: 19803797-19809016 Brassica rapa FPsc
Brara.B02702 2.0kb upstream 2.0kb upstream 2000 false A02: 19807017-19809016 Brassica rapa FPsc
Brara.B02702 2.0kb downstream 2.0kb downstream 5220 true A02: 19801797-19807016 Brassica rapa FPsc
Brara.B02702 2.0kb downstream 2.0kb downstream 2000 false A02: 19801797-19803796 Brassica rapa FPsc
Brara.B02702 5.0kb upstream 5.0kb upstream 8220 true A02: 19803797-19812016 Brassica rapa FPsc
Brara.B02702 5.0kb upstream 5.0kb upstream 5000 false A02: 19807017-19812016 Brassica rapa FPsc
Brara.B02702 5.0kb downstream 5.0kb downstream 8220 true A02: 19798797-19807016 Brassica rapa FPsc
Brara.B02702 5.0kb downstream 5.0kb downstream 5000 false A02: 19798797-19803796 Brassica rapa FPsc
Brara.B02702 10.0kb upstream 10.0kb upstream 13220 true A02: 19803797-19817016 Brassica rapa FPsc
Brara.B02702 10.0kb upstream 10.0kb upstream 10000 false A02: 19807017-19817016 Brassica rapa FPsc
Brara.B02702 10.0kb downstream 10.0kb downstream 13220 true A02: 19793797-19807016 Brassica rapa FPsc
Brara.B02702 10.0kb downstream 10.0kb downstream 10000 false A02: 19793797-19803796 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122345670 5261 Brassicaceae Singleton cluster - no MSA
123839645 5264 Brassicales-Malvales View MSA
124341389 5266 SBM View MSA
124241910 5268 Malvidae View MSA
124060634 5270 Rosid View MSA
123746885 5271 Pentapetalae View MSA
122791824 5272 Eudicot View MSA
122042701 5273 Angiosperm View MSA
121346246 5274 Embryophyte View MSA
123424795 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier