Gene : Brara.I01366 B. rapa FPsc v1.3
Defline:  (1 of 2) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  1366
Name:  ? Brara.I01366 Secondary Identifier:  ? PAC:30641355
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7560 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I01366 0.5kb upstream 0.5kb upstream 1929 true A09: 8295906-8297834 Brassica rapa FPsc
Brara.I01366 0.5kb upstream 0.5kb upstream 500 false A09: 8295906-8296405 Brassica rapa FPsc
Brara.I01366 0.5kb downstream 0.5kb downstream 1929 true A09: 8296406-8298334 Brassica rapa FPsc
Brara.I01366 0.5kb downstream 0.5kb downstream 500 false A09: 8297835-8298334 Brassica rapa FPsc
Brara.I01366 1.0kb upstream 1.0kb upstream 2429 true A09: 8295406-8297834 Brassica rapa FPsc
Brara.I01366 1.0kb upstream 1.0kb upstream 1000 false A09: 8295406-8296405 Brassica rapa FPsc
Brara.I01366 1.0kb downstream 1.0kb downstream 2429 true A09: 8296406-8298834 Brassica rapa FPsc
Brara.I01366 1.0kb downstream 1.0kb downstream 1000 false A09: 8297835-8298834 Brassica rapa FPsc
Brara.I01366 2.0kb upstream 2.0kb upstream 3429 true A09: 8294406-8297834 Brassica rapa FPsc
Brara.I01366 2.0kb upstream 2.0kb upstream 2000 false A09: 8294406-8296405 Brassica rapa FPsc
Brara.I01366 2.0kb downstream 2.0kb downstream 3429 true A09: 8296406-8299834 Brassica rapa FPsc
Brara.I01366 2.0kb downstream 2.0kb downstream 2000 false A09: 8297835-8299834 Brassica rapa FPsc
Brara.I01366 5.0kb upstream 5.0kb upstream 6429 true A09: 8291406-8297834 Brassica rapa FPsc
Brara.I01366 5.0kb upstream 5.0kb upstream 5000 false A09: 8291406-8296405 Brassica rapa FPsc
Brara.I01366 5.0kb downstream 5.0kb downstream 6429 true A09: 8296406-8302834 Brassica rapa FPsc
Brara.I01366 5.0kb downstream 5.0kb downstream 5000 false A09: 8297835-8302834 Brassica rapa FPsc
Brara.I01366 10.0kb upstream 10.0kb upstream 11429 true A09: 8286406-8297834 Brassica rapa FPsc
Brara.I01366 10.0kb upstream 10.0kb upstream 10000 false A09: 8286406-8296405 Brassica rapa FPsc
Brara.I01366 10.0kb downstream 10.0kb downstream 11429 true A09: 8296406-8307834 Brassica rapa FPsc
Brara.I01366 10.0kb downstream 10.0kb downstream 10000 false A09: 8297835-8307834 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365152 5261 Brassicaceae View MSA
123835150 5264 Brassicales-Malvales View MSA
124346414 5266 SBM View MSA
124238483 5268 Malvidae View MSA
124062148 5270 Rosid View MSA
123737612 5271 Pentapetalae View MSA
122786124 5272 Eudicot View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier