Gene : Brara.I01454 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR13773//PTHR13773:SF13 - PHOSPHATIDATE CYTIDYLYLTRANSFERASE Genomic Order:  1454
Name:  ? Brara.I01454 Secondary Identifier:  ? PAC:30645781
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY0-1319 Brassica rapa FPsc pathologic  
BrapaFPsc PWY4FS-7 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I01454 0.5kb upstream 0.5kb upstream 3935 true A09: 9180186-9184120 Brassica rapa FPsc
Brara.I01454 0.5kb upstream 0.5kb upstream 500 false A09: 9180186-9180685 Brassica rapa FPsc
Brara.I01454 0.5kb downstream 0.5kb downstream 3935 true A09: 9180686-9184620 Brassica rapa FPsc
Brara.I01454 0.5kb downstream 0.5kb downstream 500 false A09: 9184121-9184620 Brassica rapa FPsc
Brara.I01454 1.0kb upstream 1.0kb upstream 4435 true A09: 9179686-9184120 Brassica rapa FPsc
Brara.I01454 1.0kb upstream 1.0kb upstream 1000 false A09: 9179686-9180685 Brassica rapa FPsc
Brara.I01454 1.0kb downstream 1.0kb downstream 4435 true A09: 9180686-9185120 Brassica rapa FPsc
Brara.I01454 1.0kb downstream 1.0kb downstream 1000 false A09: 9184121-9185120 Brassica rapa FPsc
Brara.I01454 2.0kb upstream 2.0kb upstream 5435 true A09: 9178686-9184120 Brassica rapa FPsc
Brara.I01454 2.0kb upstream 2.0kb upstream 2000 false A09: 9178686-9180685 Brassica rapa FPsc
Brara.I01454 2.0kb downstream 2.0kb downstream 5435 true A09: 9180686-9186120 Brassica rapa FPsc
Brara.I01454 2.0kb downstream 2.0kb downstream 2000 false A09: 9184121-9186120 Brassica rapa FPsc
Brara.I01454 5.0kb upstream 5.0kb upstream 8435 true A09: 9175686-9184120 Brassica rapa FPsc
Brara.I01454 5.0kb upstream 5.0kb upstream 5000 false A09: 9175686-9180685 Brassica rapa FPsc
Brara.I01454 5.0kb downstream 5.0kb downstream 8435 true A09: 9180686-9189120 Brassica rapa FPsc
Brara.I01454 5.0kb downstream 5.0kb downstream 5000 false A09: 9184121-9189120 Brassica rapa FPsc
Brara.I01454 10.0kb upstream 10.0kb upstream 13435 true A09: 9170686-9184120 Brassica rapa FPsc
Brara.I01454 10.0kb upstream 10.0kb upstream 10000 false A09: 9170686-9180685 Brassica rapa FPsc
Brara.I01454 10.0kb downstream 10.0kb downstream 13435 true A09: 9180686-9194120 Brassica rapa FPsc
Brara.I01454 10.0kb downstream 10.0kb downstream 10000 false A09: 9184121-9194120 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360242 5261 Brassicaceae View MSA
123841401 5264 Brassicales-Malvales View MSA
124337420 5266 SBM View MSA
124243920 5268 Malvidae View MSA
124063669 5270 Rosid View MSA
123751234 5271 Pentapetalae View MSA
122787509 5272 Eudicot View MSA
122045670 5273 Angiosperm View MSA
121346295 5274 Embryophyte View MSA
123428107 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier