Gene : Brara.I00872 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR14237:SF31 - CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING PROTEIN Genomic Order:  872
Name:  ? Brara.I00872 Secondary Identifier:  ? PAC:30642789
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5963 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I00872 0.5kb upstream 0.5kb upstream 3757 true A09: 4863047-4866803 Brassica rapa FPsc
Brara.I00872 0.5kb upstream 0.5kb upstream 500 false A09: 4866304-4866803 Brassica rapa FPsc
Brara.I00872 0.5kb downstream 0.5kb downstream 3757 true A09: 4862547-4866303 Brassica rapa FPsc
Brara.I00872 0.5kb downstream 0.5kb downstream 500 false A09: 4862547-4863046 Brassica rapa FPsc
Brara.I00872 1.0kb upstream 1.0kb upstream 4257 true A09: 4863047-4867303 Brassica rapa FPsc
Brara.I00872 1.0kb upstream 1.0kb upstream 1000 false A09: 4866304-4867303 Brassica rapa FPsc
Brara.I00872 1.0kb downstream 1.0kb downstream 4257 true A09: 4862047-4866303 Brassica rapa FPsc
Brara.I00872 1.0kb downstream 1.0kb downstream 1000 false A09: 4862047-4863046 Brassica rapa FPsc
Brara.I00872 2.0kb upstream 2.0kb upstream 5257 true A09: 4863047-4868303 Brassica rapa FPsc
Brara.I00872 2.0kb upstream 2.0kb upstream 2000 false A09: 4866304-4868303 Brassica rapa FPsc
Brara.I00872 2.0kb downstream 2.0kb downstream 5257 true A09: 4861047-4866303 Brassica rapa FPsc
Brara.I00872 2.0kb downstream 2.0kb downstream 2000 false A09: 4861047-4863046 Brassica rapa FPsc
Brara.I00872 5.0kb upstream 5.0kb upstream 8257 true A09: 4863047-4871303 Brassica rapa FPsc
Brara.I00872 5.0kb upstream 5.0kb upstream 5000 false A09: 4866304-4871303 Brassica rapa FPsc
Brara.I00872 5.0kb downstream 5.0kb downstream 8257 true A09: 4858047-4866303 Brassica rapa FPsc
Brara.I00872 5.0kb downstream 5.0kb downstream 5000 false A09: 4858047-4863046 Brassica rapa FPsc
Brara.I00872 10.0kb upstream 10.0kb upstream 13257 true A09: 4863047-4876303 Brassica rapa FPsc
Brara.I00872 10.0kb upstream 10.0kb upstream 10000 false A09: 4866304-4876303 Brassica rapa FPsc
Brara.I00872 10.0kb downstream 10.0kb downstream 13257 true A09: 4853047-4866303 Brassica rapa FPsc
Brara.I00872 10.0kb downstream 10.0kb downstream 10000 false A09: 4853047-4863046 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368216 5261 Brassicaceae View MSA
123840143 5264 Brassicales-Malvales View MSA
124343871 5266 SBM View MSA
124251405 5268 Malvidae View MSA
124071174 5270 Rosid View MSA
123739194 5271 Pentapetalae View MSA
122789460 5272 Eudicot View MSA
122047706 5273 Angiosperm View MSA
121350233 5274 Embryophyte View MSA
123381636 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier