Gene : Brara.I01780 B. rapa FPsc v1.3
Defline:  (1 of 6) PTHR22958 - RELATED TO MULTIFUNCTIONAL CYCLIN-DEPENDENT KINASE-RELATED Genomic Order:  1780
Name:  ? Brara.I01780 Secondary Identifier:  ? PAC:30645512
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7409 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I01780 0.5kb upstream 0.5kb upstream 2769 true A09: 12271344-12274112 Brassica rapa FPsc
Brara.I01780 0.5kb upstream 0.5kb upstream 500 false A09: 12273613-12274112 Brassica rapa FPsc
Brara.I01780 0.5kb downstream 0.5kb downstream 2769 true A09: 12270844-12273612 Brassica rapa FPsc
Brara.I01780 0.5kb downstream 0.5kb downstream 500 false A09: 12270844-12271343 Brassica rapa FPsc
Brara.I01780 1.0kb upstream 1.0kb upstream 3269 true A09: 12271344-12274612 Brassica rapa FPsc
Brara.I01780 1.0kb upstream 1.0kb upstream 1000 false A09: 12273613-12274612 Brassica rapa FPsc
Brara.I01780 1.0kb downstream 1.0kb downstream 3269 true A09: 12270344-12273612 Brassica rapa FPsc
Brara.I01780 1.0kb downstream 1.0kb downstream 1000 false A09: 12270344-12271343 Brassica rapa FPsc
Brara.I01780 2.0kb upstream 2.0kb upstream 4269 true A09: 12271344-12275612 Brassica rapa FPsc
Brara.I01780 2.0kb upstream 2.0kb upstream 2000 false A09: 12273613-12275612 Brassica rapa FPsc
Brara.I01780 2.0kb downstream 2.0kb downstream 4269 true A09: 12269344-12273612 Brassica rapa FPsc
Brara.I01780 2.0kb downstream 2.0kb downstream 2000 false A09: 12269344-12271343 Brassica rapa FPsc
Brara.I01780 5.0kb upstream 5.0kb upstream 7269 true A09: 12271344-12278612 Brassica rapa FPsc
Brara.I01780 5.0kb upstream 5.0kb upstream 5000 false A09: 12273613-12278612 Brassica rapa FPsc
Brara.I01780 5.0kb downstream 5.0kb downstream 7269 true A09: 12266344-12273612 Brassica rapa FPsc
Brara.I01780 5.0kb downstream 5.0kb downstream 5000 false A09: 12266344-12271343 Brassica rapa FPsc
Brara.I01780 10.0kb upstream 10.0kb upstream 12269 true A09: 12271344-12283612 Brassica rapa FPsc
Brara.I01780 10.0kb upstream 10.0kb upstream 10000 false A09: 12273613-12283612 Brassica rapa FPsc
Brara.I01780 10.0kb downstream 10.0kb downstream 12269 true A09: 12261344-12273612 Brassica rapa FPsc
Brara.I01780 10.0kb downstream 10.0kb downstream 10000 false A09: 12261344-12271343 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122354419 5261 Brassicaceae Singleton cluster - no MSA
123842484 5264 Brassicales-Malvales View MSA
124323535 5266 SBM View MSA
124254090 5268 Malvidae View MSA
124051086 5270 Rosid View MSA
123747785 5271 Pentapetalae View MSA
122794114 5272 Eudicot View MSA
122041847 5273 Angiosperm View MSA
123429151 5275 Viridiplantae View MSA
121351088 5274 Embryophyte View MSA

0 Rna Seq Expressions

1 Strain

DB identifier