Gene : Brara.C00089 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11254:SF350 - E3 UBIQUITIN-PROTEIN LIGASE UPL4 Genomic Order:  89
Name:  ? Brara.C00089 Secondary Identifier:  ? PAC:30618295
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C00089 0.5kb upstream 0.5kb upstream 6709 true A03: 375150-381858 Brassica rapa FPsc
Brara.C00089 0.5kb upstream 0.5kb upstream 500 false A03: 375150-375649 Brassica rapa FPsc
Brara.C00089 0.5kb downstream 0.5kb downstream 6709 true A03: 375650-382358 Brassica rapa FPsc
Brara.C00089 0.5kb downstream 0.5kb downstream 500 false A03: 381859-382358 Brassica rapa FPsc
Brara.C00089 1.0kb upstream 1.0kb upstream 7209 true A03: 374650-381858 Brassica rapa FPsc
Brara.C00089 1.0kb upstream 1.0kb upstream 1000 false A03: 374650-375649 Brassica rapa FPsc
Brara.C00089 1.0kb downstream 1.0kb downstream 7209 true A03: 375650-382858 Brassica rapa FPsc
Brara.C00089 1.0kb downstream 1.0kb downstream 1000 false A03: 381859-382858 Brassica rapa FPsc
Brara.C00089 2.0kb upstream 2.0kb upstream 8209 true A03: 373650-381858 Brassica rapa FPsc
Brara.C00089 2.0kb upstream 2.0kb upstream 2000 false A03: 373650-375649 Brassica rapa FPsc
Brara.C00089 2.0kb downstream 2.0kb downstream 8209 true A03: 375650-383858 Brassica rapa FPsc
Brara.C00089 2.0kb downstream 2.0kb downstream 2000 false A03: 381859-383858 Brassica rapa FPsc
Brara.C00089 5.0kb upstream 5.0kb upstream 11209 true A03: 370650-381858 Brassica rapa FPsc
Brara.C00089 5.0kb upstream 5.0kb upstream 5000 false A03: 370650-375649 Brassica rapa FPsc
Brara.C00089 5.0kb downstream 5.0kb downstream 11209 true A03: 375650-386858 Brassica rapa FPsc
Brara.C00089 5.0kb downstream 5.0kb downstream 5000 false A03: 381859-386858 Brassica rapa FPsc
Brara.C00089 10.0kb upstream 10.0kb upstream 16209 true A03: 365650-381858 Brassica rapa FPsc
Brara.C00089 10.0kb upstream 10.0kb upstream 10000 false A03: 365650-375649 Brassica rapa FPsc
Brara.C00089 10.0kb downstream 10.0kb downstream 16209 true A03: 375650-391858 Brassica rapa FPsc
Brara.C00089 10.0kb downstream 10.0kb downstream 10000 false A03: 381859-391858 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377771 5261 Brassicaceae View MSA
123828199 5264 Brassicales-Malvales View MSA
124340114 5266 SBM View MSA
124240618 5268 Malvidae View MSA
124066546 5270 Rosid View MSA
123736938 5271 Pentapetalae View MSA
122796953 5272 Eudicot View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier