Gene : Brara.I05231 B. rapa FPsc v1.3
Defline:  (1 of 2) PF00289//PF02785//PF13535 - Carbamoyl-phosphate synthase L chain, N-terminal domain (CPSase_L_chain) // Biotin carboxylase C-terminal domain (Biotin_carb_C) // ATP-grasp domain (ATP-grasp_4) Genomic Order:  5231
Name:  ? Brara.I05231 Secondary Identifier:  ? PAC:30643345
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY0-1264 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-4381 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5156 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7388 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I05231 0.5kb upstream 0.5kb upstream 4738 true A09: 42899517-42904254 Brassica rapa FPsc
Brara.I05231 0.5kb upstream 0.5kb upstream 500 false A09: 42903755-42904254 Brassica rapa FPsc
Brara.I05231 0.5kb downstream 0.5kb downstream 4738 true A09: 42899017-42903754 Brassica rapa FPsc
Brara.I05231 0.5kb downstream 0.5kb downstream 500 false A09: 42899017-42899516 Brassica rapa FPsc
Brara.I05231 1.0kb upstream 1.0kb upstream 5238 true A09: 42899517-42904754 Brassica rapa FPsc
Brara.I05231 1.0kb upstream 1.0kb upstream 1000 false A09: 42903755-42904754 Brassica rapa FPsc
Brara.I05231 1.0kb downstream 1.0kb downstream 5238 true A09: 42898517-42903754 Brassica rapa FPsc
Brara.I05231 1.0kb downstream 1.0kb downstream 1000 false A09: 42898517-42899516 Brassica rapa FPsc
Brara.I05231 2.0kb upstream 2.0kb upstream 6238 true A09: 42899517-42905754 Brassica rapa FPsc
Brara.I05231 2.0kb upstream 2.0kb upstream 2000 false A09: 42903755-42905754 Brassica rapa FPsc
Brara.I05231 2.0kb downstream 2.0kb downstream 6238 true A09: 42897517-42903754 Brassica rapa FPsc
Brara.I05231 2.0kb downstream 2.0kb downstream 2000 false A09: 42897517-42899516 Brassica rapa FPsc
Brara.I05231 5.0kb upstream 5.0kb upstream 9238 true A09: 42899517-42908754 Brassica rapa FPsc
Brara.I05231 5.0kb upstream 5.0kb upstream 5000 false A09: 42903755-42908754 Brassica rapa FPsc
Brara.I05231 5.0kb downstream 5.0kb downstream 9238 true A09: 42894517-42903754 Brassica rapa FPsc
Brara.I05231 5.0kb downstream 5.0kb downstream 5000 false A09: 42894517-42899516 Brassica rapa FPsc
Brara.I05231 10.0kb upstream 10.0kb upstream 14238 true A09: 42899517-42913754 Brassica rapa FPsc
Brara.I05231 10.0kb upstream 10.0kb upstream 10000 false A09: 42903755-42913754 Brassica rapa FPsc
Brara.I05231 10.0kb downstream 10.0kb downstream 14238 true A09: 42889517-42903754 Brassica rapa FPsc
Brara.I05231 10.0kb downstream 10.0kb downstream 10000 false A09: 42889517-42899516 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378988 5261 Brassicaceae View MSA
123837075 5264 Brassicales-Malvales View MSA
124347013 5266 SBM View MSA
124253472 5268 Malvidae View MSA
124069238 5270 Rosid View MSA
123745684 5271 Pentapetalae View MSA
122794668 5272 Eudicot View MSA
122048347 5273 Angiosperm View MSA
121348356 5274 Embryophyte View MSA
123425779 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier