Gene : Brara.I04620 B. rapa FPsc v1.3
Defline:  (1 of 6) 6.1.1.20 - Phenylalanine--tRNA ligase / Phenylalanyl-tRNA synthetase Genomic Order:  4620
Name:  ? Brara.I04620 Secondary Identifier:  ? PAC:30641133
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I04620 0.5kb upstream 0.5kb upstream 3961 true A09: 39818694-39822654 Brassica rapa FPsc
Brara.I04620 0.5kb upstream 0.5kb upstream 500 false A09: 39818694-39819193 Brassica rapa FPsc
Brara.I04620 0.5kb downstream 0.5kb downstream 3961 true A09: 39819194-39823154 Brassica rapa FPsc
Brara.I04620 0.5kb downstream 0.5kb downstream 500 false A09: 39822655-39823154 Brassica rapa FPsc
Brara.I04620 1.0kb upstream 1.0kb upstream 4461 true A09: 39818194-39822654 Brassica rapa FPsc
Brara.I04620 1.0kb upstream 1.0kb upstream 1000 false A09: 39818194-39819193 Brassica rapa FPsc
Brara.I04620 1.0kb downstream 1.0kb downstream 4461 true A09: 39819194-39823654 Brassica rapa FPsc
Brara.I04620 1.0kb downstream 1.0kb downstream 1000 false A09: 39822655-39823654 Brassica rapa FPsc
Brara.I04620 2.0kb upstream 2.0kb upstream 5461 true A09: 39817194-39822654 Brassica rapa FPsc
Brara.I04620 2.0kb upstream 2.0kb upstream 2000 false A09: 39817194-39819193 Brassica rapa FPsc
Brara.I04620 2.0kb downstream 2.0kb downstream 5461 true A09: 39819194-39824654 Brassica rapa FPsc
Brara.I04620 2.0kb downstream 2.0kb downstream 2000 false A09: 39822655-39824654 Brassica rapa FPsc
Brara.I04620 5.0kb upstream 5.0kb upstream 8461 true A09: 39814194-39822654 Brassica rapa FPsc
Brara.I04620 5.0kb upstream 5.0kb upstream 5000 false A09: 39814194-39819193 Brassica rapa FPsc
Brara.I04620 5.0kb downstream 5.0kb downstream 8461 true A09: 39819194-39827654 Brassica rapa FPsc
Brara.I04620 5.0kb downstream 5.0kb downstream 5000 false A09: 39822655-39827654 Brassica rapa FPsc
Brara.I04620 10.0kb upstream 10.0kb upstream 13461 true A09: 39809194-39822654 Brassica rapa FPsc
Brara.I04620 10.0kb upstream 10.0kb upstream 10000 false A09: 39809194-39819193 Brassica rapa FPsc
Brara.I04620 10.0kb downstream 10.0kb downstream 13461 true A09: 39819194-39832654 Brassica rapa FPsc
Brara.I04620 10.0kb downstream 10.0kb downstream 10000 false A09: 39822655-39832654 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040985 5273 Angiosperm View MSA
122381699 5261 Brassicaceae View MSA
123829399 5264 Brassicales-Malvales View MSA
124337163 5266 SBM View MSA
124242019 5268 Malvidae View MSA
124067851 5270 Rosid View MSA
123744864 5271 Pentapetalae View MSA
122791100 5272 Eudicot View MSA
121346168 5274 Embryophyte View MSA
123424573 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier