Gene : Brara.I04587 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR22808 - NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING Genomic Order:  4587
Name:  ? Brara.I04587 Secondary Identifier:  ? PAC:30641750
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6829 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I04587 0.5kb upstream 0.5kb upstream 4786 true A09: 39634899-39639684 Brassica rapa FPsc
Brara.I04587 0.5kb upstream 0.5kb upstream 500 false A09: 39634899-39635398 Brassica rapa FPsc
Brara.I04587 0.5kb downstream 0.5kb downstream 4786 true A09: 39635399-39640184 Brassica rapa FPsc
Brara.I04587 0.5kb downstream 0.5kb downstream 500 false A09: 39639685-39640184 Brassica rapa FPsc
Brara.I04587 1.0kb upstream 1.0kb upstream 5286 true A09: 39634399-39639684 Brassica rapa FPsc
Brara.I04587 1.0kb upstream 1.0kb upstream 1000 false A09: 39634399-39635398 Brassica rapa FPsc
Brara.I04587 1.0kb downstream 1.0kb downstream 5286 true A09: 39635399-39640684 Brassica rapa FPsc
Brara.I04587 1.0kb downstream 1.0kb downstream 1000 false A09: 39639685-39640684 Brassica rapa FPsc
Brara.I04587 2.0kb upstream 2.0kb upstream 6286 true A09: 39633399-39639684 Brassica rapa FPsc
Brara.I04587 2.0kb upstream 2.0kb upstream 2000 false A09: 39633399-39635398 Brassica rapa FPsc
Brara.I04587 2.0kb downstream 2.0kb downstream 6286 true A09: 39635399-39641684 Brassica rapa FPsc
Brara.I04587 2.0kb downstream 2.0kb downstream 2000 false A09: 39639685-39641684 Brassica rapa FPsc
Brara.I04587 5.0kb upstream 5.0kb upstream 9286 true A09: 39630399-39639684 Brassica rapa FPsc
Brara.I04587 5.0kb upstream 5.0kb upstream 5000 false A09: 39630399-39635398 Brassica rapa FPsc
Brara.I04587 5.0kb downstream 5.0kb downstream 9286 true A09: 39635399-39644684 Brassica rapa FPsc
Brara.I04587 5.0kb downstream 5.0kb downstream 5000 false A09: 39639685-39644684 Brassica rapa FPsc
Brara.I04587 10.0kb upstream 10.0kb upstream 14286 true A09: 39625399-39639684 Brassica rapa FPsc
Brara.I04587 10.0kb upstream 10.0kb upstream 10000 false A09: 39625399-39635398 Brassica rapa FPsc
Brara.I04587 10.0kb downstream 10.0kb downstream 14286 true A09: 39635399-39649684 Brassica rapa FPsc
Brara.I04587 10.0kb downstream 10.0kb downstream 10000 false A09: 39639685-39649684 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121506815 5273 Angiosperm Singleton cluster - no MSA
122353502 5261 Brassicaceae Singleton cluster - no MSA
123792070 5264 Brassicales-Malvales Singleton cluster - no MSA
124289958 5266 SBM Singleton cluster - no MSA
124143192 5268 Malvidae Singleton cluster - no MSA
123869945 5270 Rosid Singleton cluster - no MSA
123454428 5271 Pentapetalae Singleton cluster - no MSA
122489876 5272 Eudicot Singleton cluster - no MSA
121349940 5274 Embryophyte View MSA
123426394 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier