Gene : Brara.J00097 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR10742:SF294 - PROTOPORPHYRINOGEN OXIDASE 1, CHLOROPLASTIC Genomic Order:  97
Name:  ? Brara.J00097 Secondary Identifier:  ? PAC:30612468
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CHLOROPHYLL-SYN Brassica rapa FPsc pathologic  
BrapaFPsc HEME-BIOSYNTHESIS-II Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5918 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J00097 0.5kb upstream 0.5kb upstream 3610 true A10: 540181-543790 Brassica rapa FPsc
Brara.J00097 0.5kb upstream 0.5kb upstream 500 false A10: 540181-540680 Brassica rapa FPsc
Brara.J00097 0.5kb downstream 0.5kb downstream 3610 true A10: 540681-544290 Brassica rapa FPsc
Brara.J00097 0.5kb downstream 0.5kb downstream 500 false A10: 543791-544290 Brassica rapa FPsc
Brara.J00097 1.0kb upstream 1.0kb upstream 4110 true A10: 539681-543790 Brassica rapa FPsc
Brara.J00097 1.0kb upstream 1.0kb upstream 1000 false A10: 539681-540680 Brassica rapa FPsc
Brara.J00097 1.0kb downstream 1.0kb downstream 4110 true A10: 540681-544790 Brassica rapa FPsc
Brara.J00097 1.0kb downstream 1.0kb downstream 1000 false A10: 543791-544790 Brassica rapa FPsc
Brara.J00097 2.0kb upstream 2.0kb upstream 5110 true A10: 538681-543790 Brassica rapa FPsc
Brara.J00097 2.0kb upstream 2.0kb upstream 2000 false A10: 538681-540680 Brassica rapa FPsc
Brara.J00097 2.0kb downstream 2.0kb downstream 5110 true A10: 540681-545790 Brassica rapa FPsc
Brara.J00097 2.0kb downstream 2.0kb downstream 2000 false A10: 543791-545790 Brassica rapa FPsc
Brara.J00097 5.0kb upstream 5.0kb upstream 8110 true A10: 535681-543790 Brassica rapa FPsc
Brara.J00097 5.0kb upstream 5.0kb upstream 5000 false A10: 535681-540680 Brassica rapa FPsc
Brara.J00097 5.0kb downstream 5.0kb downstream 8110 true A10: 540681-548790 Brassica rapa FPsc
Brara.J00097 5.0kb downstream 5.0kb downstream 5000 false A10: 543791-548790 Brassica rapa FPsc
Brara.J00097 10.0kb upstream 10.0kb upstream 13110 true A10: 530681-543790 Brassica rapa FPsc
Brara.J00097 10.0kb upstream 10.0kb upstream 10000 false A10: 530681-540680 Brassica rapa FPsc
Brara.J00097 10.0kb downstream 10.0kb downstream 13110 true A10: 540681-553790 Brassica rapa FPsc
Brara.J00097 10.0kb downstream 10.0kb downstream 10000 false A10: 543791-553790 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372816 5261 Brassicaceae View MSA
123832763 5264 Brassicales-Malvales View MSA
124343518 5266 SBM View MSA
124242274 5268 Malvidae View MSA
124065931 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier