Gene : Brara.I05483 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR23023:SF141 - INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED Genomic Order:  5483
Name:  ? Brara.I05483 Secondary Identifier:  ? PAC:30641164
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWYDQC-4 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I05483 0.5kb upstream 0.5kb upstream 2439 true A09: 44136614-44139052 Brassica rapa FPsc
Brara.I05483 0.5kb upstream 0.5kb upstream 500 false A09: 44138553-44139052 Brassica rapa FPsc
Brara.I05483 0.5kb downstream 0.5kb downstream 2439 true A09: 44136114-44138552 Brassica rapa FPsc
Brara.I05483 0.5kb downstream 0.5kb downstream 500 false A09: 44136114-44136613 Brassica rapa FPsc
Brara.I05483 1.0kb upstream 1.0kb upstream 2939 true A09: 44136614-44139552 Brassica rapa FPsc
Brara.I05483 1.0kb upstream 1.0kb upstream 1000 false A09: 44138553-44139552 Brassica rapa FPsc
Brara.I05483 1.0kb downstream 1.0kb downstream 2939 true A09: 44135614-44138552 Brassica rapa FPsc
Brara.I05483 1.0kb downstream 1.0kb downstream 1000 false A09: 44135614-44136613 Brassica rapa FPsc
Brara.I05483 2.0kb upstream 2.0kb upstream 3939 true A09: 44136614-44140552 Brassica rapa FPsc
Brara.I05483 2.0kb upstream 2.0kb upstream 2000 false A09: 44138553-44140552 Brassica rapa FPsc
Brara.I05483 2.0kb downstream 2.0kb downstream 3939 true A09: 44134614-44138552 Brassica rapa FPsc
Brara.I05483 2.0kb downstream 2.0kb downstream 2000 false A09: 44134614-44136613 Brassica rapa FPsc
Brara.I05483 5.0kb upstream 5.0kb upstream 6939 true A09: 44136614-44143552 Brassica rapa FPsc
Brara.I05483 5.0kb upstream 5.0kb upstream 5000 false A09: 44138553-44143552 Brassica rapa FPsc
Brara.I05483 5.0kb downstream 5.0kb downstream 6939 true A09: 44131614-44138552 Brassica rapa FPsc
Brara.I05483 5.0kb downstream 5.0kb downstream 5000 false A09: 44131614-44136613 Brassica rapa FPsc
Brara.I05483 10.0kb upstream 10.0kb upstream 11939 true A09: 44136614-44148552 Brassica rapa FPsc
Brara.I05483 10.0kb upstream 10.0kb upstream 10000 false A09: 44138553-44148552 Brassica rapa FPsc
Brara.I05483 10.0kb downstream 10.0kb downstream 11939 true A09: 44126614-44138552 Brassica rapa FPsc
Brara.I05483 10.0kb downstream 10.0kb downstream 10000 false A09: 44126614-44136613 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122353360 5261 Brassicaceae Singleton cluster - no MSA
123791958 5264 Brassicales-Malvales Singleton cluster - no MSA
124289856 5266 SBM Singleton cluster - no MSA
124255981 5268 Malvidae View MSA
124073695 5270 Rosid View MSA
123751619 5271 Pentapetalae View MSA
122797534 5272 Eudicot View MSA
122049474 5273 Angiosperm View MSA
121351632 5274 Embryophyte View MSA
123426700 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier