Gene : Brara.C01320 B. rapa FPsc v1.3
Defline:  (1 of 6) PTHR22835//PTHR22835:SF236 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN Genomic Order:  1320
Name:  ? Brara.C01320 Secondary Identifier:  ? PAC:30618622
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc LIPAS-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C01320 0.5kb upstream 0.5kb upstream 2744 true A03: 6176548-6179291 Brassica rapa FPsc
Brara.C01320 0.5kb upstream 0.5kb upstream 500 false A03: 6178792-6179291 Brassica rapa FPsc
Brara.C01320 0.5kb downstream 0.5kb downstream 2744 true A03: 6176048-6178791 Brassica rapa FPsc
Brara.C01320 0.5kb downstream 0.5kb downstream 500 false A03: 6176048-6176547 Brassica rapa FPsc
Brara.C01320 1.0kb upstream 1.0kb upstream 3244 true A03: 6176548-6179791 Brassica rapa FPsc
Brara.C01320 1.0kb upstream 1.0kb upstream 1000 false A03: 6178792-6179791 Brassica rapa FPsc
Brara.C01320 1.0kb downstream 1.0kb downstream 3244 true A03: 6175548-6178791 Brassica rapa FPsc
Brara.C01320 1.0kb downstream 1.0kb downstream 1000 false A03: 6175548-6176547 Brassica rapa FPsc
Brara.C01320 2.0kb upstream 2.0kb upstream 4244 true A03: 6176548-6180791 Brassica rapa FPsc
Brara.C01320 2.0kb upstream 2.0kb upstream 2000 false A03: 6178792-6180791 Brassica rapa FPsc
Brara.C01320 2.0kb downstream 2.0kb downstream 4244 true A03: 6174548-6178791 Brassica rapa FPsc
Brara.C01320 2.0kb downstream 2.0kb downstream 2000 false A03: 6174548-6176547 Brassica rapa FPsc
Brara.C01320 5.0kb upstream 5.0kb upstream 7244 true A03: 6176548-6183791 Brassica rapa FPsc
Brara.C01320 5.0kb upstream 5.0kb upstream 5000 false A03: 6178792-6183791 Brassica rapa FPsc
Brara.C01320 5.0kb downstream 5.0kb downstream 7244 true A03: 6171548-6178791 Brassica rapa FPsc
Brara.C01320 5.0kb downstream 5.0kb downstream 5000 false A03: 6171548-6176547 Brassica rapa FPsc
Brara.C01320 10.0kb upstream 10.0kb upstream 12244 true A03: 6176548-6188791 Brassica rapa FPsc
Brara.C01320 10.0kb upstream 10.0kb upstream 10000 false A03: 6178792-6188791 Brassica rapa FPsc
Brara.C01320 10.0kb downstream 10.0kb downstream 12244 true A03: 6166548-6178791 Brassica rapa FPsc
Brara.C01320 10.0kb downstream 10.0kb downstream 10000 false A03: 6166548-6176547 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122347827 5261 Brassicaceae Singleton cluster - no MSA
123842612 5264 Brassicales-Malvales View MSA
124350782 5266 SBM View MSA
124247051 5268 Malvidae View MSA
124074404 5270 Rosid View MSA
123753785 5271 Pentapetalae View MSA
122797352 5272 Eudicot View MSA
122051674 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier