Gene : Brara.J01916 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR10947 - PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 Genomic Order:  1916
Name:  ? Brara.J01916 Secondary Identifier:  ? PAC:30612140
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J01916 0.5kb upstream 0.5kb upstream 4714 true A10: 15330024-15334737 Brassica rapa FPsc
Brara.J01916 0.5kb upstream 0.5kb upstream 500 false A10: 15334238-15334737 Brassica rapa FPsc
Brara.J01916 0.5kb downstream 0.5kb downstream 4714 true A10: 15329524-15334237 Brassica rapa FPsc
Brara.J01916 0.5kb downstream 0.5kb downstream 500 false A10: 15329524-15330023 Brassica rapa FPsc
Brara.J01916 1.0kb upstream 1.0kb upstream 5214 true A10: 15330024-15335237 Brassica rapa FPsc
Brara.J01916 1.0kb upstream 1.0kb upstream 1000 false A10: 15334238-15335237 Brassica rapa FPsc
Brara.J01916 1.0kb downstream 1.0kb downstream 5214 true A10: 15329024-15334237 Brassica rapa FPsc
Brara.J01916 1.0kb downstream 1.0kb downstream 1000 false A10: 15329024-15330023 Brassica rapa FPsc
Brara.J01916 2.0kb upstream 2.0kb upstream 6214 true A10: 15330024-15336237 Brassica rapa FPsc
Brara.J01916 2.0kb upstream 2.0kb upstream 2000 false A10: 15334238-15336237 Brassica rapa FPsc
Brara.J01916 2.0kb downstream 2.0kb downstream 6214 true A10: 15328024-15334237 Brassica rapa FPsc
Brara.J01916 2.0kb downstream 2.0kb downstream 2000 false A10: 15328024-15330023 Brassica rapa FPsc
Brara.J01916 5.0kb upstream 5.0kb upstream 9214 true A10: 15330024-15339237 Brassica rapa FPsc
Brara.J01916 5.0kb upstream 5.0kb upstream 5000 false A10: 15334238-15339237 Brassica rapa FPsc
Brara.J01916 5.0kb downstream 5.0kb downstream 9214 true A10: 15325024-15334237 Brassica rapa FPsc
Brara.J01916 5.0kb downstream 5.0kb downstream 5000 false A10: 15325024-15330023 Brassica rapa FPsc
Brara.J01916 10.0kb upstream 10.0kb upstream 14214 true A10: 15330024-15344237 Brassica rapa FPsc
Brara.J01916 10.0kb upstream 10.0kb upstream 10000 false A10: 15334238-15344237 Brassica rapa FPsc
Brara.J01916 10.0kb downstream 10.0kb downstream 14214 true A10: 15320024-15334237 Brassica rapa FPsc
Brara.J01916 10.0kb downstream 10.0kb downstream 10000 false A10: 15320024-15330023 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361573 5261 Brassicaceae View MSA
123834957 5264 Brassicales-Malvales View MSA
124339817 5266 SBM View MSA
124238696 5268 Malvidae View MSA
124062601 5270 Rosid View MSA
123738962 5271 Pentapetalae View MSA
122792851 5272 Eudicot View MSA
122042437 5273 Angiosperm View MSA
121345306 5274 Embryophyte View MSA
123425015 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier