Gene : Brara.E02677 B. rapa FPsc v1.3
Defline:  (1 of 5) PTHR10543:SF26 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED3, CHLOROPLASTIC-RELATED Genomic Order:  2677
Name:  ? Brara.E02677 Secondary Identifier:  ? PAC:30626050
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-695 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.E02677 0.5kb upstream 0.5kb upstream 2800 true A05: 23433421-23436220 Brassica rapa FPsc
Brara.E02677 0.5kb upstream 0.5kb upstream 500 false A05: 23433421-23433920 Brassica rapa FPsc
Brara.E02677 0.5kb downstream 0.5kb downstream 2800 true A05: 23433921-23436720 Brassica rapa FPsc
Brara.E02677 0.5kb downstream 0.5kb downstream 500 false A05: 23436221-23436720 Brassica rapa FPsc
Brara.E02677 1.0kb upstream 1.0kb upstream 3300 true A05: 23432921-23436220 Brassica rapa FPsc
Brara.E02677 1.0kb upstream 1.0kb upstream 1000 false A05: 23432921-23433920 Brassica rapa FPsc
Brara.E02677 1.0kb downstream 1.0kb downstream 3300 true A05: 23433921-23437220 Brassica rapa FPsc
Brara.E02677 1.0kb downstream 1.0kb downstream 1000 false A05: 23436221-23437220 Brassica rapa FPsc
Brara.E02677 2.0kb upstream 2.0kb upstream 4300 true A05: 23431921-23436220 Brassica rapa FPsc
Brara.E02677 2.0kb upstream 2.0kb upstream 2000 false A05: 23431921-23433920 Brassica rapa FPsc
Brara.E02677 2.0kb downstream 2.0kb downstream 4300 true A05: 23433921-23438220 Brassica rapa FPsc
Brara.E02677 2.0kb downstream 2.0kb downstream 2000 false A05: 23436221-23438220 Brassica rapa FPsc
Brara.E02677 5.0kb upstream 5.0kb upstream 7300 true A05: 23428921-23436220 Brassica rapa FPsc
Brara.E02677 5.0kb upstream 5.0kb upstream 5000 false A05: 23428921-23433920 Brassica rapa FPsc
Brara.E02677 5.0kb downstream 5.0kb downstream 7300 true A05: 23433921-23441220 Brassica rapa FPsc
Brara.E02677 5.0kb downstream 5.0kb downstream 5000 false A05: 23436221-23441220 Brassica rapa FPsc
Brara.E02677 10.0kb upstream 10.0kb upstream 12300 true A05: 23423921-23436220 Brassica rapa FPsc
Brara.E02677 10.0kb upstream 10.0kb upstream 10000 false A05: 23423921-23433920 Brassica rapa FPsc
Brara.E02677 10.0kb downstream 10.0kb downstream 12300 true A05: 23433921-23446220 Brassica rapa FPsc
Brara.E02677 10.0kb downstream 10.0kb downstream 10000 false A05: 23436221-23446220 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122349722 5261 Brassicaceae Singleton cluster - no MSA
123788863 5264 Brassicales-Malvales Singleton cluster - no MSA
124286882 5266 SBM Singleton cluster - no MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier