Gene : Brara.K01089 B. rapa FPsc v1.3

Defline:  (1 of 1) PF00782//PF10409 - Dual specificity phosphatase, catalytic domain (DSPc) // C2 domain of PTEN tumour-suppressor protein (PTEN_C2) Genomic Order:  1
Name:  ? Brara.K01089 Secondary Identifier:  ? PAC:30614867

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6368 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K01089 0.5kb upstream 0.5kb upstream 1800 true Scaffold4628: 8-1807 Brassica rapa FPsc
Brara.K01089 0.5kb upstream 0.5kb upstream 2 false Scaffold4628: 1806-1807 Brassica rapa FPsc
Brara.K01089 0.5kb downstream 0.5kb downstream 1805 true Scaffold4628: 1-1805 Brassica rapa FPsc
Brara.K01089 0.5kb downstream 0.5kb downstream 7 false Scaffold4628: 1-7 Brassica rapa FPsc
Brara.K01089 1.0kb upstream 1.0kb upstream 1800 true Scaffold4628: 8-1807 Brassica rapa FPsc
Brara.K01089 1.0kb upstream 1.0kb upstream 2 false Scaffold4628: 1806-1807 Brassica rapa FPsc
Brara.K01089 1.0kb downstream 1.0kb downstream 1805 true Scaffold4628: 1-1805 Brassica rapa FPsc
Brara.K01089 1.0kb downstream 1.0kb downstream 7 false Scaffold4628: 1-7 Brassica rapa FPsc
Brara.K01089 2.0kb upstream 2.0kb upstream 1800 true Scaffold4628: 8-1807 Brassica rapa FPsc
Brara.K01089 2.0kb upstream 2.0kb upstream 2 false Scaffold4628: 1806-1807 Brassica rapa FPsc
Brara.K01089 2.0kb downstream 2.0kb downstream 1805 true Scaffold4628: 1-1805 Brassica rapa FPsc
Brara.K01089 2.0kb downstream 2.0kb downstream 7 false Scaffold4628: 1-7 Brassica rapa FPsc
Brara.K01089 5.0kb upstream 5.0kb upstream 1800 true Scaffold4628: 8-1807 Brassica rapa FPsc
Brara.K01089 5.0kb upstream 5.0kb upstream 2 false Scaffold4628: 1806-1807 Brassica rapa FPsc
Brara.K01089 5.0kb downstream 5.0kb downstream 1805 true Scaffold4628: 1-1805 Brassica rapa FPsc
Brara.K01089 5.0kb downstream 5.0kb downstream 7 false Scaffold4628: 1-7 Brassica rapa FPsc
Brara.K01089 10.0kb upstream 10.0kb upstream 1800 true Scaffold4628: 8-1807 Brassica rapa FPsc
Brara.K01089 10.0kb upstream 10.0kb upstream 2 false Scaffold4628: 1806-1807 Brassica rapa FPsc
Brara.K01089 10.0kb downstream 10.0kb downstream 1805 true Scaffold4628: 1-1805 Brassica rapa FPsc
Brara.K01089 10.0kb downstream 10.0kb downstream 7 false Scaffold4628: 1-7 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122346766 5261 Brassicaceae Singleton cluster - no MSA
123840120 5264 Brassicales-Malvales View MSA
124338365 5266 SBM View MSA
124239105 5268 Malvidae View MSA
124050149 5270 Rosid View MSA
123737073 5271 Pentapetalae View MSA
122787177 5272 Eudicot View MSA
122048056 5273 Angiosperm View MSA
121345998 5274 Embryophyte View MSA
123380306 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier