Gene : Brara.K00129 B. rapa FPsc v1.3
Defline:  (1 of 12) PTHR23344:SF8 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE-LIKE PROTEIN-RELATED Genomic Order:  113
Name:  ? Brara.K00129 Secondary Identifier:  ? PAC:30614666
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7409 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K00129 0.5kb upstream 0.5kb upstream 3659 true Scaffold10985: 620224-623882 Brassica rapa FPsc
Brara.K00129 0.5kb upstream 0.5kb upstream 500 false Scaffold10985: 620224-620723 Brassica rapa FPsc
Brara.K00129 0.5kb downstream 0.5kb downstream 3659 true Scaffold10985: 620724-624382 Brassica rapa FPsc
Brara.K00129 0.5kb downstream 0.5kb downstream 500 false Scaffold10985: 623883-624382 Brassica rapa FPsc
Brara.K00129 1.0kb upstream 1.0kb upstream 4159 true Scaffold10985: 619724-623882 Brassica rapa FPsc
Brara.K00129 1.0kb upstream 1.0kb upstream 1000 false Scaffold10985: 619724-620723 Brassica rapa FPsc
Brara.K00129 1.0kb downstream 1.0kb downstream 4159 true Scaffold10985: 620724-624882 Brassica rapa FPsc
Brara.K00129 1.0kb downstream 1.0kb downstream 1000 false Scaffold10985: 623883-624882 Brassica rapa FPsc
Brara.K00129 2.0kb upstream 2.0kb upstream 5159 true Scaffold10985: 618724-623882 Brassica rapa FPsc
Brara.K00129 2.0kb upstream 2.0kb upstream 2000 false Scaffold10985: 618724-620723 Brassica rapa FPsc
Brara.K00129 2.0kb downstream 2.0kb downstream 5159 true Scaffold10985: 620724-625882 Brassica rapa FPsc
Brara.K00129 2.0kb downstream 2.0kb downstream 2000 false Scaffold10985: 623883-625882 Brassica rapa FPsc
Brara.K00129 5.0kb upstream 5.0kb upstream 8159 true Scaffold10985: 615724-623882 Brassica rapa FPsc
Brara.K00129 5.0kb upstream 5.0kb upstream 5000 false Scaffold10985: 615724-620723 Brassica rapa FPsc
Brara.K00129 5.0kb downstream 5.0kb downstream 8159 true Scaffold10985: 620724-628882 Brassica rapa FPsc
Brara.K00129 5.0kb downstream 5.0kb downstream 5000 false Scaffold10985: 623883-628882 Brassica rapa FPsc
Brara.K00129 10.0kb upstream 10.0kb upstream 13159 true Scaffold10985: 610724-623882 Brassica rapa FPsc
Brara.K00129 10.0kb upstream 10.0kb upstream 10000 false Scaffold10985: 610724-620723 Brassica rapa FPsc
Brara.K00129 10.0kb downstream 10.0kb downstream 13159 true Scaffold10985: 620724-633882 Brassica rapa FPsc
Brara.K00129 10.0kb downstream 10.0kb downstream 10000 false Scaffold10985: 623883-633882 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122382273 5261 Brassicaceae View MSA
123839797 5264 Brassicales-Malvales View MSA
124343123 5266 SBM View MSA
124245225 5268 Malvidae View MSA
124064633 5270 Rosid View MSA
123747170 5271 Pentapetalae View MSA
122796977 5272 Eudicot View MSA
122046858 5273 Angiosperm View MSA
121349950 5274 Embryophyte View MSA
123381513 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier