Gene : Brara.J02828 B. rapa FPsc v1.3
Defline:  (1 of 8) 1.1.1.41 - Isocitrate dehydrogenase (NAD(+)) / Nicotinamide adenine dinucleotide isocitrate dehydrogenase Genomic Order:  2828
Name:  ? Brara.J02828 Secondary Identifier:  ? PAC:30614035
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5690 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6549 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J02828 0.5kb upstream 0.5kb upstream 2897 true A10: 19406589-19409485 Brassica rapa FPsc
Brara.J02828 0.5kb upstream 0.5kb upstream 500 false A10: 19408986-19409485 Brassica rapa FPsc
Brara.J02828 0.5kb downstream 0.5kb downstream 2897 true A10: 19406089-19408985 Brassica rapa FPsc
Brara.J02828 0.5kb downstream 0.5kb downstream 500 false A10: 19406089-19406588 Brassica rapa FPsc
Brara.J02828 1.0kb upstream 1.0kb upstream 3397 true A10: 19406589-19409985 Brassica rapa FPsc
Brara.J02828 1.0kb upstream 1.0kb upstream 1000 false A10: 19408986-19409985 Brassica rapa FPsc
Brara.J02828 1.0kb downstream 1.0kb downstream 3397 true A10: 19405589-19408985 Brassica rapa FPsc
Brara.J02828 1.0kb downstream 1.0kb downstream 1000 false A10: 19405589-19406588 Brassica rapa FPsc
Brara.J02828 2.0kb upstream 2.0kb upstream 4397 true A10: 19406589-19410985 Brassica rapa FPsc
Brara.J02828 2.0kb upstream 2.0kb upstream 2000 false A10: 19408986-19410985 Brassica rapa FPsc
Brara.J02828 2.0kb downstream 2.0kb downstream 4397 true A10: 19404589-19408985 Brassica rapa FPsc
Brara.J02828 2.0kb downstream 2.0kb downstream 2000 false A10: 19404589-19406588 Brassica rapa FPsc
Brara.J02828 5.0kb upstream 5.0kb upstream 7397 true A10: 19406589-19413985 Brassica rapa FPsc
Brara.J02828 5.0kb upstream 5.0kb upstream 5000 false A10: 19408986-19413985 Brassica rapa FPsc
Brara.J02828 5.0kb downstream 5.0kb downstream 7397 true A10: 19401589-19408985 Brassica rapa FPsc
Brara.J02828 5.0kb downstream 5.0kb downstream 5000 false A10: 19401589-19406588 Brassica rapa FPsc
Brara.J02828 10.0kb upstream 10.0kb upstream 12397 true A10: 19406589-19418985 Brassica rapa FPsc
Brara.J02828 10.0kb upstream 10.0kb upstream 10000 false A10: 19408986-19418985 Brassica rapa FPsc
Brara.J02828 10.0kb downstream 10.0kb downstream 12397 true A10: 19396589-19408985 Brassica rapa FPsc
Brara.J02828 10.0kb downstream 10.0kb downstream 10000 false A10: 19396589-19406588 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122346533 5261 Brassicaceae Singleton cluster - no MSA
123786201 5264 Brassicales-Malvales Singleton cluster - no MSA
124284317 5266 SBM Singleton cluster - no MSA
124251295 5268 Malvidae View MSA
124066571 5270 Rosid View MSA
123739712 5271 Pentapetalae View MSA
122792664 5272 Eudicot View MSA
122041698 5273 Angiosperm View MSA
121349734 5274 Embryophyte View MSA
123425496 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier