Gene : Brara.C02722 B. rapa FPsc v1.3

Defline:  (1 of 1) PTHR11946:SF7 - LEUCINE--TRNA LIGASE, MITOCHONDRIAL-RELATED Genomic Order:  2722
Name:  ? Brara.C02722 Secondary Identifier:  ? PAC:30619034

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C02722 0.5kb upstream 0.5kb upstream 5277 true A03: 13892837-13898113 Brassica rapa FPsc
Brara.C02722 0.5kb upstream 0.5kb upstream 500 false A03: 13892837-13893336 Brassica rapa FPsc
Brara.C02722 0.5kb downstream 0.5kb downstream 5277 true A03: 13893337-13898613 Brassica rapa FPsc
Brara.C02722 0.5kb downstream 0.5kb downstream 500 false A03: 13898114-13898613 Brassica rapa FPsc
Brara.C02722 1.0kb upstream 1.0kb upstream 5777 true A03: 13892337-13898113 Brassica rapa FPsc
Brara.C02722 1.0kb upstream 1.0kb upstream 1000 false A03: 13892337-13893336 Brassica rapa FPsc
Brara.C02722 1.0kb downstream 1.0kb downstream 5777 true A03: 13893337-13899113 Brassica rapa FPsc
Brara.C02722 1.0kb downstream 1.0kb downstream 1000 false A03: 13898114-13899113 Brassica rapa FPsc
Brara.C02722 2.0kb upstream 2.0kb upstream 6777 true A03: 13891337-13898113 Brassica rapa FPsc
Brara.C02722 2.0kb upstream 2.0kb upstream 2000 false A03: 13891337-13893336 Brassica rapa FPsc
Brara.C02722 2.0kb downstream 2.0kb downstream 6777 true A03: 13893337-13900113 Brassica rapa FPsc
Brara.C02722 2.0kb downstream 2.0kb downstream 2000 false A03: 13898114-13900113 Brassica rapa FPsc
Brara.C02722 5.0kb upstream 5.0kb upstream 9777 true A03: 13888337-13898113 Brassica rapa FPsc
Brara.C02722 5.0kb upstream 5.0kb upstream 5000 false A03: 13888337-13893336 Brassica rapa FPsc
Brara.C02722 5.0kb downstream 5.0kb downstream 9777 true A03: 13893337-13903113 Brassica rapa FPsc
Brara.C02722 5.0kb downstream 5.0kb downstream 5000 false A03: 13898114-13903113 Brassica rapa FPsc
Brara.C02722 10.0kb upstream 10.0kb upstream 14777 true A03: 13883337-13898113 Brassica rapa FPsc
Brara.C02722 10.0kb upstream 10.0kb upstream 10000 false A03: 13883337-13893336 Brassica rapa FPsc
Brara.C02722 10.0kb downstream 10.0kb downstream 14777 true A03: 13893337-13908113 Brassica rapa FPsc
Brara.C02722 10.0kb downstream 10.0kb downstream 10000 false A03: 13898114-13908113 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041369 5273 Angiosperm View MSA
122361495 5261 Brassicaceae View MSA
123829481 5264 Brassicales-Malvales View MSA
124336430 5266 SBM View MSA
124239362 5268 Malvidae View MSA
124073421 5270 Rosid View MSA
123749958 5271 Pentapetalae View MSA
122789048 5272 Eudicot View MSA
121347479 5274 Embryophyte View MSA
123424257 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier